RNA id: TU1662127


Basic Information

Item Value
RNA id TU1662127
length 282
lncRNA type intronic
GC content 0.44
exon number 1
gene id G1452575
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44103017 ~ 44103298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTttgcattattgtgtgtgtgtgtggggggggggaggcTGTGGAATTCCCCCCAAAAGTGGGCCTCACTAACTTTCGGAGATCTGAAGGAATGTGCGGACGGGCAAGATTAGTCTGGCCTGTTTTTTTGTGGTGTTCCTATTAAAGTGGATCGATGGTTACACCCACACAGCTGTAAAATAACTACAAGTGATCATTACTGTTGGGGCAACAATGTGTTGTTGAACTAACATAACACTAATCCATGTAAGGGGAAGTTGTTTCTCAAATGTTGACATAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1662126 lncRNA upstream 44 44102763 ~ 44102973 (+) True G1452574
TU1662125 lncRNA upstream 569 44102136 ~ 44102448 (+) True G1452573
TU1662067 lncRNA upstream 4183 44097852 ~ 44098834 (+) True G1452516
TU1662051 lncRNA upstream 5737 43985916 ~ 44097280 (+) True LOC110493929
TU1662060 lncRNA upstream 62957 43939982 ~ 44040060 (+) True plxnb1b
TU1662135 lncRNA downstream 13767 44117065 ~ 44117305 (+) True G1452583
TU1662062 lncRNA downstream 45578 44148876 ~ 44149942 (+) True G1452511
TU1662066 lncRNA downstream 47376 44150674 ~ 44151034 (+) True G1452515
TU1662141 lncRNA downstream 50179 44153477 ~ 44153848 (+) True G1452589
TU1662148 lncRNA downstream 55871 44159169 ~ 44159387 (+) True G1452596
XM_021568537.2 mRNA upstream 5734 44082296 ~ 44097283 (+) False LOC110493929
XM_021568531.2 mRNA upstream 28521 43939917 ~ 44074496 (+) False plxnb1b
LOC118940464 mRNA upstream 643814 43458743 ~ 43459203 (+) True LOC118940464
XM_036949948.1 mRNA upstream 644761 43445921 ~ 43458256 (+) True LOC118940465
XM_036949951.1 mRNA downstream 422 44103720 ~ 44148363 (+) False setd5
XM_036949950.1 mRNA downstream 423 44103721 ~ 44148363 (+) False setd5
XM_036949952.1 mRNA downstream 424 44103722 ~ 44148363 (+) False setd5
XM_036949953.1 mRNA downstream 449 44103747 ~ 44148363 (+) False setd5
XM_036949955.1 mRNA downstream 450 44103748 ~ 44148363 (+) True setd5
TU1661935 other upstream 496236 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 539316 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 610949 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 619324 43482260 ~ 43483693 (+) True G1452359
TU1661374 other upstream 666277 43333515 ~ 43436740 (+) True G1451948
TU1662359 other downstream 409771 44513069 ~ 44520477 (+) True G1452804
TU1663269 other downstream 732699 44835997 ~ 44854739 (+) True G1453605
TU1663579 other downstream 947431 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 966673 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 1155177 45258475 ~ 45259571 (+) True G1454049

Expression Profile