RNA id: TU1662316



Basic Information


Item Value
RNA id TU1662316
length 221
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1452762
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44461171 ~ 44465402 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTGAGACCTGGTAcatccagcagagggagccaacgtCGCATGATGTAGACTCCGTCTGTCACCAGACCTTGACGAGTCTGCCCCGGTGGCTTGTTCGCGGTACGCCACAAgccattatatatacagtgccttcagaaaatattcagaccccttgaattgttacacattttgttaggttgcagccttgttctaaaatatattattttccttattaatatac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1662244 lncRNA upstream 118551 44336248 ~ 44342620 (+) True G1452690
TU1662211 lncRNA upstream 145615 44313381 ~ 44315556 (+) True mtmr14
TU1662232 lncRNA upstream 152724 44308221 ~ 44308447 (+) True G1452679
TU1662228 lncRNA upstream 166044 44294920 ~ 44295127 (+) True G1452675
TU1662227 lncRNA upstream 174310 44286589 ~ 44286861 (+) True G1452674
TU1662334 lncRNA downstream 20915 44486317 ~ 44486556 (+) True G1452780
TU1662338 lncRNA downstream 24147 44489549 ~ 44489759 (+) True G1452784
TU1662377 lncRNA downstream 93782 44559184 ~ 44571064 (+) True si:dkey-156n14.3
TU1662379 lncRNA downstream 105847 44571249 ~ 44571912 (+) True G1452821
TU1662386 lncRNA downstream 107359 44572761 ~ 44573379 (+) True G1452827
XM_021568544.2 mRNA upstream 145569 44272284 ~ 44315602 (+) False mtmr14
XM_021568545.2 mRNA upstream 145569 44272284 ~ 44315602 (+) False mtmr14
XM_036949952.1 mRNA upstream 312808 44103722 ~ 44148363 (+) False setd5
XM_036949956.1 mRNA downstream 87511 44552913 ~ 44571070 (+) False si:dkey-156n14.3
XM_021568553.2 mRNA downstream 136501 44601903 ~ 44615849 (+) False LOC110493936
XM_021568555.2 mRNA downstream 304074 44769476 ~ 44794940 (+) False LOC110493938
XR_005036987.1 mRNA downstream 381715 44847117 ~ 44858271 (+) True LOC118940467
XM_036949962.1 mRNA downstream 430561 44895963 ~ 44930156 (+) False LOC110493942
TU1661935 other upstream 854390 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 897470 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 969103 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 977478 43482260 ~ 43483693 (+) True G1452359
TU1661374 other upstream 1024431 43333515 ~ 43436740 (+) True G1451948
TU1662359 other downstream 47667 44513069 ~ 44520477 (+) True G1452804
TU1663269 other downstream 370595 44835997 ~ 44854739 (+) True G1453605
TU1663579 other downstream 585327 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 604569 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 793073 45258475 ~ 45259571 (+) True G1454049

Expression Profile