RNA id: TU1662993


Basic Information

Item Value
RNA id TU1662993
length 216
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1453368
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44608675 ~ 44608890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAggataaagagagtgagagggagaaagaaggaagagcaagaaagagagaaagtgtgtaTGAGTAAGGGGCCTGTTTTGTGTGAGGGGCCTGTTTTGCACACAATCGGGCTGAGGGAAACTAGTGTGGAAGTGAGACGAACAAAGGCTAAGCACTGAATAGTTACCATGACTGTGTGATAGGAACGTCTAGGCTGGCAGTCTGCTTAAAAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1662386 lncRNA upstream 35296 44572761 ~ 44573379 (+) True G1452827
TU1662379 lncRNA upstream 36763 44571249 ~ 44571912 (+) True G1452821
TU1662377 lncRNA upstream 37611 44559184 ~ 44571064 (+) True si:dkey-156n14.3
TU1662338 lncRNA upstream 118916 44489549 ~ 44489759 (+) True G1452784
TU1662334 lncRNA upstream 122119 44486317 ~ 44486556 (+) True G1452780
TU1662995 lncRNA downstream 1329 44610219 ~ 44610431 (+) True G1453370
TU1662997 lncRNA downstream 2735 44611625 ~ 44611828 (+) True G1453372
TU1662998 lncRNA downstream 3045 44611935 ~ 44612221 (+) True G1453373
TU1662999 lncRNA downstream 3369 44612259 ~ 44612505 (+) True G1453374
TU1662987 lncRNA downstream 5674 44614564 ~ 44615845 (+) True LOC110493936
XM_036949956.1 mRNA upstream 37605 44552913 ~ 44571070 (+) False si:dkey-156n14.3
XM_021568546.2 mRNA upstream 62841 44324715 ~ 44545834 (+) True LOC110493933
XM_021568544.2 mRNA upstream 293073 44272284 ~ 44315602 (+) False mtmr14
XM_021568545.2 mRNA upstream 293073 44272284 ~ 44315602 (+) False mtmr14
XM_036949955.1 mRNA upstream 460312 44103748 ~ 44148363 (+) True setd5
XM_021568555.2 mRNA downstream 160586 44769476 ~ 44794940 (+) False LOC110493938
XR_005036987.1 mRNA downstream 238227 44847117 ~ 44858271 (+) True LOC118940467
XM_036949962.1 mRNA downstream 287073 44895963 ~ 44930156 (+) False LOC110493942
XM_036949961.1 mRNA downstream 287077 44895967 ~ 44921015 (+) False LOC110493942
XM_036949963.1 mRNA downstream 294599 44903489 ~ 44921015 (+) False LOC110493942
TU1662359 other upstream 88198 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 1001894 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 1044974 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 1116607 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 1124982 43482260 ~ 43483693 (+) True G1452359
TU1663269 other downstream 227107 44835997 ~ 44854739 (+) True G1453605
TU1663579 other downstream 441839 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 461081 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 649585 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 726404 45335294 ~ 45336523 (+) True G1454127

Expression Profile