RNA id: TU1662995


Basic Information

Item Value
RNA id TU1662995
length 213
lncRNA type intronic
GC content 0.41
exon number 1
gene id G1453370
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44610219 ~ 44610431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTAAGctagcgctaactagctagcgatGATCTTCATAGCACTGGTAAGGTCATGTGTTTAAATTAAGATAGCTTTAACCTTTTTTGCATTGCCTTTGCACCCCCctgcccaaaaatgttttcaTCTGACCCTCCCCTTCTACTGTAAAATAGCACCCTCCCCCCTCATAAAGttaactcaaaataatgtttGCGACCACAAATAACAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1662993 lncRNA upstream 1329 44608675 ~ 44608890 (+) True G1453368
TU1662386 lncRNA upstream 36840 44572761 ~ 44573379 (+) True G1452827
TU1662379 lncRNA upstream 38307 44571249 ~ 44571912 (+) True G1452821
TU1662377 lncRNA upstream 39155 44559184 ~ 44571064 (+) True si:dkey-156n14.3
TU1662338 lncRNA upstream 120460 44489549 ~ 44489759 (+) True G1452784
TU1662997 lncRNA downstream 1194 44611625 ~ 44611828 (+) True G1453372
TU1662998 lncRNA downstream 1504 44611935 ~ 44612221 (+) True G1453373
TU1662999 lncRNA downstream 1828 44612259 ~ 44612505 (+) True G1453374
TU1662987 lncRNA downstream 4133 44614564 ~ 44615845 (+) True LOC110493936
TU1663018 lncRNA downstream 15828 44626259 ~ 44630843 (+) True G1453390
XM_036949956.1 mRNA upstream 39149 44552913 ~ 44571070 (+) False si:dkey-156n14.3
XM_021568546.2 mRNA upstream 64385 44324715 ~ 44545834 (+) True LOC110493933
XM_021568544.2 mRNA upstream 294617 44272284 ~ 44315602 (+) False mtmr14
XM_021568545.2 mRNA upstream 294617 44272284 ~ 44315602 (+) False mtmr14
XM_036949955.1 mRNA upstream 461856 44103748 ~ 44148363 (+) True setd5
XM_021568555.2 mRNA downstream 159045 44769476 ~ 44794940 (+) False LOC110493938
XR_005036987.1 mRNA downstream 236686 44847117 ~ 44858271 (+) True LOC118940467
XM_036949962.1 mRNA downstream 285532 44895963 ~ 44930156 (+) False LOC110493942
XM_036949961.1 mRNA downstream 285536 44895967 ~ 44921015 (+) False LOC110493942
XM_036949963.1 mRNA downstream 293058 44903489 ~ 44921015 (+) False LOC110493942
TU1662359 other upstream 89742 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 1003438 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 1046518 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 1118151 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 1126526 43482260 ~ 43483693 (+) True G1452359
TU1663269 other downstream 225566 44835997 ~ 44854739 (+) True G1453605
TU1663579 other downstream 440298 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 459540 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 648044 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 724863 45335294 ~ 45336523 (+) True G1454127

Expression Profile