RNA id: TU1663163


Basic Information

Item Value
RNA id TU1663163
length 292
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1453534
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44717545 ~ 44717836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atattaatattcatgaatcacaagtgaaatatagcgaaacacagttgagccttttgttaatcaccctgttgtCTCAGATtatgaaattatgctttacagcgaaagcaatacaagcgtttgtgtaagtttatcgatagcctagcatagcattatgtacacttagcatcaggaagcttggtcacgaaaatcagaaaagcaatcaaatgaaccgtttacctttgatgatcttcggatgttttcactcacgagactcccagttagacagcaaatgttccttttgttccataaagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1663158 lncRNA upstream 3160 44714139 ~ 44714385 (+) True G1453529
TU1663046 lncRNA upstream 72084 44645234 ~ 44645461 (+) True G1453418
TU1663018 lncRNA upstream 86702 44626259 ~ 44630843 (+) True G1453390
TU1662987 lncRNA upstream 101700 44614564 ~ 44615845 (+) True LOC110493936
TU1662999 lncRNA upstream 105040 44612259 ~ 44612505 (+) True G1453374
TU1663164 lncRNA downstream 57 44717893 ~ 44718805 (+) True G1453535
TU1663170 lncRNA downstream 3879 44721715 ~ 44721940 (+) True G1453541
TU1663173 lncRNA downstream 7280 44725116 ~ 44725359 (+) True G1453544
TU1663192 lncRNA downstream 21472 44739308 ~ 44739623 (+) True G1453563
TU1663197 lncRNA downstream 27673 44745509 ~ 44745738 (+) True G1453568
XM_021568553.2 mRNA upstream 101696 44601903 ~ 44615849 (+) False LOC110493936
XM_036949956.1 mRNA upstream 146475 44552913 ~ 44571070 (+) False si:dkey-156n14.3
XM_021568546.2 mRNA upstream 171711 44324715 ~ 44545834 (+) True LOC110493933
XM_021568544.2 mRNA upstream 401943 44272284 ~ 44315602 (+) False mtmr14
XM_021568555.2 mRNA downstream 51640 44769476 ~ 44794940 (+) False LOC110493938
XR_005036987.1 mRNA downstream 129281 44847117 ~ 44858271 (+) True LOC118940467
XM_036949962.1 mRNA downstream 178127 44895963 ~ 44930156 (+) False LOC110493942
XM_036949961.1 mRNA downstream 178131 44895967 ~ 44921015 (+) False LOC110493942
XM_036949963.1 mRNA downstream 185653 44903489 ~ 44921015 (+) False LOC110493942
TU1662359 other upstream 197068 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 1110764 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 1153844 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 1225477 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 1233852 43482260 ~ 43483693 (+) True G1452359
TU1663269 other downstream 118161 44835997 ~ 44854739 (+) True G1453605
TU1663579 other downstream 332893 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 352135 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 540639 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 617458 45335294 ~ 45336523 (+) True G1454127

Expression Profile