RNA id: TU1663213


Basic Information

Item Value
RNA id TU1663213
length 2687
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1453573
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44748104 ~ 44752126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttattttgtaccTTTATTAAGCACTAAGACCACGGTTTCTTTCGCAGATGCatgaacacatcaataaacaacaattATACTATACATATCTGTATACACCTCAATTACACAATGCATGAAAAGcaaacacagaacacaaaaagcaaaacacaatcatATGAAACACACTCATCCACCTGAATTGCCCAACATGAGTATTAAGACTAGCTGTATTTCTAAGATATGCTATTGAGCTGCAAACCACACATGGTTTAGAGCTGCAAACCACACAGGGTTTATATGCAGACGTGATGTATCCAAGCCCAGAATGAGTGCTGCAACAAAGGGGTTTATTTGCCCAATCTGGGCTAAGAGGAGTTTTGACCCAAGTCTACTACACATGGTCTCAGTCTAGATAGGGGAAATACACtactcttctctaccactctttGAAAGAAAGATGGGCTTTTCTGACCTCTACTGGTCATATAACTGTACTACAAGTGGAGCTAAATTCAATGAttagtttatctttatttaactaggtaagtcagttaagaacaaattcttatttacaatgacggcataccccggccaaaccctaattgtacactgccctatgggactcccaatcacgggcaGTTGTGATACaccctggaatcaaaccagtctgtagtgatgcctctagcactgagatgcaatcccttagaccgctgcgccactcaggagcctacAAATTATGGGGACCTCCTTCCCGTATACAAACATCACGTGACTCATTGTAAAAACGAGGAGAATCtagtcgtgttcattaggcaccacaCTGAAGAAAATGTACTAAAATGGAGGGACTACCTAGTCTCGTTCAATAAGAAATACTAATTTGTTTTACTTTACTTGATTgagtttatttttacagggacagttaACATGAATCAACATTTCAGTAATGTATTTCAATTTTTTTACATTAAATTGTTAAATGTTTTCCGTCGTGTGCACTAATGAACACGCCCCTGGAGTTTTAACATTGTCCAAAATCATGCTGCAATAGATAGGACTTGCTATAGCTATTTATAAAGTTACCCTGCATGCGTGTTTGGACAGTAAAGTCAAATTTGAAGTCTGTTTAAAAACACCCTTTCAGTGAACATATCGGTAATGACGTTCCCTCTATAGTTGAATTGGTAAACATACAGCAAGTTAATTCCCTTTAATAATATGTCATATTTTCctaatatactgtagctgtcagattGAGAACTGGCATTCTTTGAATAGGTGTAAGTAAAATGTTAGGCAACGTTGTTaacattttaaatatataaacCTCTGTCTTCCACACATAGGGAAGAGAATGACATCCAAGATgtacagatttaaaaaaatatattagacAGTGATATGCACTCCATTAGTGACTCCCCCAAGCTATGGATATCCATCTGTTTGACTACCTTGAAGTGCTCCGTTTAAGACGGTCTATAGACGGTCTATAAATGATAGATACAATACAAGGTACCAGATAACTAGTTACATGGACTTTTTCCTCATGGAactcactagctaggtttccatccaattggcgacagattttcatgtaaATATTCAAAAACTTTTCCACCAGAGATGTTTACATAaaattgacttgttgcggataaCTTAGTGGACATAAAATAGACAAATAGTGTGGTTAAATTCCCATGAACTGAATTAAAAATACAAGttgaatgggtttccattgcattttcaactctagtGATGGTTTTGTCAAAAATAAAATTGTGTTATATAGCttatgtgcccactctggtcttggcacgtgtactctagccaacagcttgcagatacagtgcaggtggGCTTTCCTACATGATGAGATTGTAGTATGGACAAAAGAGCGAGATTACCTCGATTTGTCAaacagccaagcatcgatcatcatgtgaCCAGAATAAGAGTTTAAGACGGTCTATATTTATTGGAACtgatcaagctcatcaccgtgcactttcaccagcctgtgaagttcatcatttattGAATCGGTAGCCTAATAAACAACATGTTTTTTGAGTcgcagtgggaggaccacacaacatatcatcttGTGACTTTTACTTCGATATATTTGAGCATAAAGGCGTTTCCAGCGCCATTTGTTGCATAATTTactttaccgacacaaaaagatcccactctgtcgacatttggaaagttaaCTGTACCGACAAATTAGCTGCTTCCATCAGGGCTGTCGTGACATATTTTTTCTCCAACGGACTTTACTCGCTTAAAAAAGATTGGATGGAGAACCACATACacagtgccgtgaaaaagtatttgaccCCTTTCTGATTCTCTCTCATTTTTGGGGGgaactgaatgttatcagatcttcagccaaaacctaatattagataaagggaacctgaatTTACAAATAAGTATATATTTGTTGTGTTATTAgtaaagttatgcaacacccaattcccctgtgtgaaaaaagtaattgcccccttacacacAATAACTGGTTGTTTTAGACTTGTTTGTTTTGGATTAAATtcagctctgtatcagagaactctacaggagaatgtcaggccatccgtctgtgtGCTGAAGCTGAaacgcagctgggtcatgcagcaagacaatgatctaaAACACGCAATCAAGTCTGcctgaaaatggctaaaaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1663197 lncRNA upstream 2366 44745509 ~ 44745738 (+) True G1453568
TU1663192 lncRNA upstream 8481 44739308 ~ 44739623 (+) True G1453563
TU1663173 lncRNA upstream 22745 44725116 ~ 44725359 (+) True G1453544
TU1663170 lncRNA upstream 26164 44721715 ~ 44721940 (+) True G1453541
TU1663164 lncRNA upstream 29299 44717893 ~ 44718805 (+) True G1453535
TU1663227 lncRNA downstream 38177 44788967 ~ 44797689 (+) False LOC110493938
TU1663228 lncRNA downstream 38177 44788967 ~ 44797689 (+) True LOC110493938
TU1663277 lncRNA downstream 68917 44819707 ~ 44819991 (+) True G1453612
TU1663302 lncRNA downstream 137601 44888391 ~ 44888641 (+) True G1453637
TU1663326 lncRNA downstream 197697 44948487 ~ 44948877 (+) True G1453661
XM_021568553.2 mRNA upstream 132255 44601903 ~ 44615849 (+) False LOC110493936
XM_036949956.1 mRNA upstream 177034 44552913 ~ 44571070 (+) False si:dkey-156n14.3
XM_021568546.2 mRNA upstream 202270 44324715 ~ 44545834 (+) True LOC110493933
XM_021568544.2 mRNA upstream 432502 44272284 ~ 44315602 (+) False mtmr14
XM_021568555.2 mRNA downstream 18686 44769476 ~ 44794940 (+) False LOC110493938
XR_005036987.1 mRNA downstream 96327 44847117 ~ 44858271 (+) True LOC118940467
XM_036949962.1 mRNA downstream 145173 44895963 ~ 44930156 (+) False LOC110493942
XM_036949961.1 mRNA downstream 145177 44895967 ~ 44921015 (+) False LOC110493942
XM_036949963.1 mRNA downstream 152699 44903489 ~ 44921015 (+) False LOC110493942
TU1662359 other upstream 227627 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 1141323 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 1184403 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 1256036 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 1264411 43482260 ~ 43483693 (+) True G1452359
TU1663269 other downstream 85207 44835997 ~ 44854739 (+) True G1453605
TU1663579 other downstream 299939 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 319181 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 507685 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 584504 45335294 ~ 45336523 (+) True G1454127

Expression Profile