RNA id: TU1663269


Basic Information

Item Value
RNA id TU1663269
length 1386
RNA type TUCP
GC content 0.57
exon number 10
gene id G1453605
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44835997 ~ 44854739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTGGGGTGGATGCCGATGGTGTTGTCCAGCTGCTCTTTAGTCAGTCCGCACTTCATGGCCGCGCCATAGCCCTGCGTCACCTCGCCAGCGTTGGGCCCCAGGTAGTGGAACCCGATCACACGGTCATTGTCCAGTTTATTGCAGATGATCTTGGAGTAGCACTTGTTGTTGTCCCTGTTGGGGACAGTGAACTCCAGAGGCCAGAAGAGACTGTGGTACACCTCCAAGTTGTCTTGGCCGTACAGCTCAATAGCTTTCTCCTCAGAATGCCCACAGGCGCCATACTCCAGAGGGGTGAACACAGTGGTGGGAACGTTTACGTAGTCACACTTGAGGGAGGCTCCCGCGTACAGCCGGCGTGCCAGCAGCTTTCCGGCCTGGATGGCCACGGGTGTCAGCTCCCACTTGCCCTCCAGGATGTCTCCGATGGCGTAGATGTGCGGCACGTTGGTCTGTTCCTCGTCGTTCACCGGAACCTTACCGTTCTGGGGTTGACTTTGACTCCGGCTTGATCCAGGCCGATCTTGCCTGTACACGCGTCACGCCCCACGGCTATCAACACAGTGTTGTATTCTCCCTCGATGGTCTCGTCACTCTCCGTGCTCTTGGCTGTCACCTTCAGCCTCCCAGGAGTGCctgcctccagctcctccacCTTGACTGGGACGTACTTCCGGAGGAACTTGACACCATGCTCTTCCATGTGTTCCCCGGCGCGGTTGGCCATGTCCTGGTCGAAGCCCCTCAGCAAGATGGAGCGTACCATGACCGTCACGTCCAGGCCCAGGCCCGCAAGGAAACCCCCGCACTCCAGTGCCACGTAGGATGCCCCGATCACCAGGGTCTTGCCGGGGCAGTGGGGGAGCGAGAACAGGTCATCGCTGGTGATGCAGTACTCTTTGTCTCCGGGGATGCCCAGGTAACGCGGTCTCTCGCCCGTCGCCAGGATAAACTTAGCTGCTGTGTGGAAGGTCTCCTTTCCTCGCTTGTTGGTCGCCTTGATTTTGTGTGGCTCGATGAACTCTGCGTAGGAATTGACGTAGTTGACGTTTTTGTCGCGCAGTGCCACCCGGTAGCCCCAGTTCAACGACCCAATGTAGTTGTTCACTGCCGTCTTCATCGTCTCCCAGTTGTGTTTCACTGTCTCCTCAGGCACCTCCCAGCCAAACTTGCGGGCGTCCTGTATGGACGTCCCGAGCAGGGCTGTCTGGTGCATCAGCTTCTTGGGGATGCAGCCCACGTTCACGCACGTGCCACCCAGGCCTGTTCAGGGACACGTACAGAATCACACATTTGGAGATTTCATTTAGATCCCATTGAAACATGCAGACATGTTGCAACTGAAAACAGCGGTATTCTGCTAGCTATTTTGATTTATGCGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1663277 lncRNA upstream 16006 44819707 ~ 44819991 (+) True G1453612
TU1663227 lncRNA upstream 38308 44788967 ~ 44797689 (+) False LOC110493938
TU1663228 lncRNA upstream 38308 44788967 ~ 44797689 (+) True LOC110493938
TU1663211 lncRNA upstream 83871 44748201 ~ 44752126 (+) True G1453573
TU1663213 lncRNA upstream 85207 44748104 ~ 44750790 (+) False G1453573
TU1663302 lncRNA downstream 33652 44888391 ~ 44888641 (+) True G1453637
TU1663326 lncRNA downstream 93748 44948487 ~ 44948877 (+) True G1453661
TU1663334 lncRNA downstream 174628 45029367 ~ 45029564 (+) True G1453666
TU1663335 lncRNA downstream 176478 45031217 ~ 45031471 (+) True G1453667
TU1663567 lncRNA downstream 187694 45042433 ~ 45042916 (+) True G1453879
XM_021568555.2 mRNA upstream 41057 44769476 ~ 44794940 (+) False LOC110493938
XM_021568553.2 mRNA upstream 220148 44601903 ~ 44615849 (+) False LOC110493936
XM_036949956.1 mRNA upstream 264927 44552913 ~ 44571070 (+) False si:dkey-156n14.3
XM_021568546.2 mRNA upstream 290163 44324715 ~ 44545834 (+) True LOC110493933
XM_021568544.2 mRNA upstream 520395 44272284 ~ 44315602 (+) False mtmr14
XM_036949962.1 mRNA downstream 41224 44895963 ~ 44930156 (+) False LOC110493942
XM_036949961.1 mRNA downstream 41228 44895967 ~ 44921015 (+) False LOC110493942
XM_036949963.1 mRNA downstream 48750 44903489 ~ 44921015 (+) False LOC110493942
XM_036949964.1 mRNA downstream 49202 44903941 ~ 44921015 (+) True LOC110493942
XM_021568566.2 mRNA downstream 114739 44969478 ~ 45029092 (+) True LOC110493946
TU1662359 other upstream 315520 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 1229216 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 1272296 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 1343929 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 1352304 43482260 ~ 43483693 (+) True G1452359
TU1663579 other downstream 195990 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 215232 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 403736 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 480555 45335294 ~ 45336523 (+) True G1454127
TU1664577 other downstream 1001510 45856249 ~ 45858501 (+) True G1454824

Expression Profile