RNA id: TU1663334


Basic Information

Item Value
RNA id TU1663334
length 198
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G1453666
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45029367 ~ 45029564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attacatttgtcaTGCACTTCCTGATGCATTATGTTACTGTGCAACTTGACCACATTTGTAAATACACTGCTAGAGCGTTTTTAGATACTTATTACAGTTGAATGATAGATATAACCTCACATCCACTAACCACTATTTATAACCCATTTTTTTGTGCATTCAACAAAAGGAACTTGGTCATACTTAAGGAAATGTTT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1663326 lncRNA upstream 80490 44948487 ~ 44948877 (+) True G1453661
TU1663302 lncRNA upstream 140726 44888391 ~ 44888641 (+) True G1453637
TU1663277 lncRNA upstream 209376 44819707 ~ 44819991 (+) True G1453612
TU1663227 lncRNA upstream 231678 44788967 ~ 44797689 (+) False LOC110493938
TU1663228 lncRNA upstream 231678 44788967 ~ 44797689 (+) True LOC110493938
TU1663335 lncRNA downstream 1653 45031217 ~ 45031471 (+) True G1453667
TU1663567 lncRNA downstream 12869 45042433 ~ 45042916 (+) True G1453879
TU1663574 lncRNA downstream 16432 45045996 ~ 45049214 (+) True G1453885
TU1663603 lncRNA downstream 58192 45087756 ~ 45091335 (+) True G1453913
TU1663605 lncRNA downstream 63531 45093095 ~ 45094284 (+) True G1453915
XM_021568566.2 mRNA upstream 275 44969478 ~ 45029092 (+) True LOC110493946
XM_036949962.1 mRNA upstream 99211 44895963 ~ 44930156 (+) False LOC110493942
XM_036949961.1 mRNA upstream 108352 44895967 ~ 44921015 (+) False LOC110493942
XM_036949963.1 mRNA upstream 108352 44903489 ~ 44921015 (+) False LOC110493942
XM_036949964.1 mRNA upstream 108352 44903941 ~ 44921015 (+) True LOC110493942
XM_021568567.2 mRNA downstream 34118 45063682 ~ 45069411 (+) False LOC110493947
XM_021568568.2 mRNA downstream 34122 45063686 ~ 45069411 (+) True LOC110493947
XM_036949966.1 mRNA downstream 50042 45079606 ~ 45087749 (+) True LOC110493949
trnaq-uug-4 mRNA downstream 323914 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_021568582.2 mRNA downstream 489162 45518726 ~ 45526398 (+) True LOC110493956
TU1663269 other upstream 174628 44835997 ~ 44854739 (+) True G1453605
TU1662359 other upstream 508890 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 1422586 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 1465666 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 1537299 43491174 ~ 43492068 (+) True G1452362
TU1663579 other downstream 21165 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 40407 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 228911 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 305730 45335294 ~ 45336523 (+) True G1454127
TU1664577 other downstream 826685 45856249 ~ 45858501 (+) True G1454824

Expression Profile