RNA id: TU1663567



Basic Information


Item Value
RNA id TU1663567
length 484
lncRNA type intronic
GC content 0.41
exon number 1
gene id G1453879
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45042433 ~ 45042916 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACCCAAACCGTCTGCGAGTGTGCGCCATCGTGCGTCATTATGCGTAAAtctattttgtccccctacaccaaacgcgatcacgacacgcaggttaaaatatcaaaacaaactctgaaccaattacattaatttggggacaggtcgaaaagcattaaacatttatggcaatttagctagttagcttgcacttgctagctaatttgtcctacttagctagcttgctattgctagataatttgtcctgggatataaacattgagttgttattttacctgaaatgcacaaggtcctctactccgacaattaatccacacataaaacagtcaaccgaatcgtttctggtcatctctcctccttccaggctttttcatctttgaacttatatggtgattggcatctaaactttcatcgAATTACCACAACGAGAGGCAacacagttcatctttcaatcacccacatgggtataaccaatgaggagatggca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1663335 lncRNA upstream 10962 45031217 ~ 45031471 (+) True G1453667
TU1663334 lncRNA upstream 12869 45029367 ~ 45029564 (+) True G1453666
TU1663326 lncRNA upstream 93556 44948487 ~ 44948877 (+) True G1453661
TU1663302 lncRNA upstream 153792 44888391 ~ 44888641 (+) True G1453637
TU1663277 lncRNA upstream 222442 44819707 ~ 44819991 (+) True G1453612
TU1663574 lncRNA downstream 3080 45045996 ~ 45049214 (+) True G1453885
TU1663603 lncRNA downstream 44840 45087756 ~ 45091335 (+) True G1453913
TU1663605 lncRNA downstream 50179 45093095 ~ 45094284 (+) True G1453915
TU1663680 lncRNA downstream 129874 45172790 ~ 45172996 (+) True G1453990
TU1663714 lncRNA downstream 169621 45212537 ~ 45212737 (+) True G1454023
XM_021568566.2 mRNA upstream 13341 44969478 ~ 45029092 (+) True LOC110493946
XM_036949962.1 mRNA upstream 112277 44895963 ~ 44930156 (+) False LOC110493942
XM_021568567.2 mRNA downstream 20766 45063682 ~ 45069411 (+) False LOC110493947
XM_021568568.2 mRNA downstream 20770 45063686 ~ 45069411 (+) True LOC110493947
XM_036949966.1 mRNA downstream 36690 45079606 ~ 45087749 (+) True LOC110493949
trnaq-uug-4 mRNA downstream 310562 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_021568582.2 mRNA downstream 475810 45518726 ~ 45526398 (+) True LOC110493956
TU1663269 other upstream 187694 44835997 ~ 44854739 (+) True G1453605
TU1662359 other upstream 521956 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 1435652 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 1478732 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 1550365 43491174 ~ 43492068 (+) True G1452362
TU1663579 other downstream 7813 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 27055 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 215559 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 292378 45335294 ~ 45336523 (+) True G1454127
TU1664577 other downstream 813333 45856249 ~ 45858501 (+) True G1454824

Expression Profile