RNA id: TU1663714


Basic Information

Item Value
RNA id TU1663714
length 201
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1454023
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45212537 ~ 45212737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTATAGAGCTTTTACATCTTTCTCTCACCTCTAAATCGCATCAGATCCATTTCTGTGGGTATAACTAACaatatgcactgagtgtacaaaacattaaggacacctgctctttccatgacagactgaccaggtaaatccaggtgaaagcttggatcccttattgatgccacttgttaaatccactttaatcagtgtagatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1663680 lncRNA upstream 39541 45172790 ~ 45172996 (+) True G1453990
TU1663605 lncRNA upstream 118253 45093095 ~ 45094284 (+) True G1453915
TU1663603 lncRNA upstream 121202 45087756 ~ 45091335 (+) True G1453913
TU1663574 lncRNA upstream 163323 45045996 ~ 45049214 (+) True G1453885
TU1663567 lncRNA upstream 169621 45042433 ~ 45042916 (+) True G1453879
TU1663715 lncRNA downstream 104 45212841 ~ 45213162 (+) True G1454024
TU1663731 lncRNA downstream 30228 45242965 ~ 45243316 (+) True G1454040
TU1663739 lncRNA downstream 38436 45251173 ~ 45255211 (+) False G1454048
TU1663740 lncRNA downstream 38436 45251173 ~ 45251593 (+) False G1454048
TU1663741 lncRNA downstream 38436 45251173 ~ 45254809 (+) True G1454048
XM_036949966.1 mRNA upstream 124788 45079606 ~ 45087749 (+) True LOC110493949
XM_021568567.2 mRNA upstream 143126 45063682 ~ 45069411 (+) False LOC110493947
XM_021568568.2 mRNA upstream 143126 45063686 ~ 45069411 (+) True LOC110493947
XM_021568566.2 mRNA upstream 183445 44969478 ~ 45029092 (+) True LOC110493946
XM_036949964.1 mRNA upstream 291522 44903941 ~ 44921015 (+) True LOC110493942
trnaq-uug-4 mRNA downstream 140741 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_021568582.2 mRNA downstream 305989 45518726 ~ 45526398 (+) True LOC110493956
NM_001129986.1 mRNA downstream 354517 45567254 ~ 45572753 (+) True e3
XM_021568597.2 mRNA downstream 541032 45753769 ~ 45827044 (+) True LOC110493964
XM_021568602.2 mRNA downstream 951741 46164478 ~ 46232702 (+) False dlgap4b
TU1663604 other upstream 141612 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 161532 45050729 ~ 45051005 (+) True G1453889
TU1663269 other upstream 357798 44835997 ~ 44854739 (+) True G1453605
TU1662359 other upstream 692060 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 1605756 43606313 ~ 43606781 (+) True G1452399
TU1663743 other downstream 45738 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 122557 45335294 ~ 45336523 (+) True G1454127
TU1664577 other downstream 643512 45856249 ~ 45858501 (+) True G1454824
TU1666430 other downstream 2015482 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 2592621 47805358 ~ 47807481 (+) True LOC100135862

Expression Profile