RNA id: TU1663741


Basic Information

Item Value
RNA id TU1663741
length 3637
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G1454048
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45251173 ~ 45255211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGTTTATTATTTGATTTGCAAAACATCGGACAAAAATAACATTACATAAACACCCATTTATAATGTCTTTTGtaatagaaaaaaaaaacatcttaaaaagaaataaaaacaaagaTCATACATTGCAAGAAATTAGACAAATGACTTTGATAATTGCAGCCATATAACGCTGACATCGACAGGCAGTAATTGATAGCATATTCATCCAAATGTACGCATTGTGTTACAAAACAATACTGTAAGTGCTCTTGTTGTTTCTGTCTTTCCATCGAATGTGATGTGGTGCAGTGTCTTAAAAACAGGATTGTTCATTTAACAAGCGAACATTTTTTTAGAAACAATTCTCAAACAACTCAATTTTCTTGCCAATAAAGACAGCTAAAGTAGAATCACCGTCAGTTGCTAGAATAATAGGTTATTAAGTAGTATTGACCAATCTTTGAAATAAGCCATCTTGagaaacaatatatatatattttttaaatagttttAACATACTTGAAAAAGATACTTGGAAAAGTTTGCTTGCTAACTTTCTAATCCTGCTTCACGAAACACTCCAATCTTCCAAAGGTTCCTATAGGCACTCAACTCAGGCCCTGAAAGGCCACAGTGTCTGCTGGCTGTCAATACCTATAGCTAGTCGCTACTAATTCTGAACTCCTTTCACTCCCTGCATTGTACTTCAAAGTGTAGAGTGAGGAGTACATGGGAGCCAATTCCCCATTTTCTTTGGGAAAAAGGAATTCTTTGTGAATGCAGGTAACTTTAAGGTACTTTTGAGCTAGCTTCTATCGATTTCATGTGTAGCAAGGtctacatacactaccgttcaaatgtttggggtcacttagaaatgtccttgtttttgaaagaaaaacttttttttttgtctattaaaataacatcaaattgatcagaaatacagtgtcgacattgttaatgttgtaaatgactattggagctggaaacagctgattttttaaatttaatatctacataggagtacagaggcccattatcagcaaccatgtgTTCAAATGGCACACTGtgatagctaatccaagtttatcattttaaaaggctaatagaTCATTGtaaaacctttttgcaattatgttagcacagctgacaactggggtgctgattaaagaagcaataaaactggccttctttagaatagttgagtatctggagcatcagcatttatgggttcgattacaggctcaaaatggccagaaacaaataactttcttttgaaacttttcagtctattcttgttctgagaaatgaaggctattctatgcgagaaattgccaagaaactgaagacctcgtacaacgctgtgtactactcccttcacagaacagcacaaactggcgctaaccagaatagaaagaggagtgggagggcccggtgcacaactgagcaagaggacaagtacattagagtttgagaaacagacgcctcacaagtcctcaactggcagcttcattatatagtacccgcaaaacaccagtctcaacgtcaacagtgaagaggcgactctgggatgctggctttctaggcagagttgcaaagaaaaagccatatctcagactggccaataaaaataaaagattaagataggCAAAAGAACTCAGACACTGGACACAGGAAgtttggaaaaaagtgttatggacagactaatctaagtttgaggtgtttggatcacaaagaagacAATTCGTGAGACTCAGGAAaagtgaagatgttggaggagtgcttgacgccatctgtcaagcattgTGGAGGCTATGTGACGTTCTGGGTGTGCTTTGgcggtggtaaagtgggagatttgtacagggtaaaagggatcttgaagaaggaaggttATCACCTCATTTTGCaatgccatgccataccctgtggacggcgcttaatggGAGCCAATTTCGTCACAGGACAaggacccaaagcacagctccaagcTATGCAAGAAccatttagggaagaagcagtcagcttgaattctgtctataatggagtggccagcacagtcaccggatctcaaccctattgagctgttgtgggagcagcttgactgtatggtacgtaagaattgcccatcaagccaatccaacttgtgggatgtgcttcaggaagcatggggtgaaattaacaaattgacaactagaataccaaaggtctgcaaggctgtaattgctgcaaatggaggattctttgacgaaagcaacgttttgaaggacacaattattatttcaattgaaAAATCATTCTTTCTAACcgtgtcaacgtcttgactatatttcctattcattttgcaactcatttcatgtatgttttcatggaaaacaaggacatctctaagtgaacccaaacttttgaacggcagtgtacCTCCAATAGCTAGCATGACGACTGATTATCAAACTGGCAGATTTTTTCCTAGACACATTTTGTCTTTTCTTTTTTAAAGTTGTTTGAAAACAAACGGTCAAAATTGAGACAGTTAGTTGGAAAGATAGCAGGGACCATTGCCAAAACGTATTAAATAACAGCACTCAAAAGATATTATAGCAGTTACTCAACATCTTCAATTGGCACTAACTGAGCAATGTCGGGCAGGgtagaattttttatttttttttgcccaCGCTACAGACTGCTATATAGGTCCACTAATACATGACTTGTAAAGGCCTACATTtgttaaacaaaaacaacaacaaaaaacgtttTCATAATGTAATTCCGATATTTCCAGAGGTACTGTAGTGCCCCTACTTCCCGCGGCTGTGGTAGCTGGCGATTAATATTACACTGATCAATTAAAGCAGTTTAATGAAAGTTTATAAATGGGCATCAACTTCCTCAAGTCCACATTGTTCAAATAGGAACTTGCCCCATGTGTGCTTTTCTAGAACCAGCTTGCCCTAGCTTCAGACCAACCTAAACTACTCAGCTTTACAAAAACTACACAACACGACACTGTGGCCTCCTATGTCCTGGTTAGCATATTTCTGCTGGGTGATACTCAACCGTGCCAAGGGTAGTAAGAATAACAACATTCACATCAACCTGTGATGTTCTTGATAAAAGCAGCATTAAATGGATACTGAGGGTTGTCCTCTCAGAACTTTTGCCCTTTCCTGAAAATCTGAAGATCTATATGGAATAGTCTACTCTAAAAATATGGGCTGGGGCATAAGAGTGGAGAAAatgagctgagagaaggagggaaggagagagagaagagatggattgGGGAAaggggacagagtgagagacatcTAGTGAGGGCAAAGACCATTCCAACTGTGCCAAGAGGAGCAGACACTCCAACTCTCCGGCCGAAACCATATGACTCATGACCTCTCTATACAGAGGTCACAGTTAAGTCTCTGGCTGCGTTTCATTCCAGGATGTTGCTCCCTCCCTTCTGTCCTTCAATGAAAGCCGAATATGGCGGAAACCAGGTGCAGGTATTTCTTACATTGTTGTGTCAGACGTGCGATATGCGAGTGAACTAAGAAAAAAAAGGGAGGAAACCACGTATTAGAATGAAACGCAACCCCGGCCAACCCAAACCCAGCCTGGAATCCCATTGGTCAGAATGCAGGCACAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1663731 lncRNA upstream 7857 45242965 ~ 45243316 (+) True G1454040
TU1663715 lncRNA upstream 38011 45212841 ~ 45213162 (+) True G1454024
TU1663714 lncRNA upstream 38436 45212537 ~ 45212737 (+) True G1454023
TU1663680 lncRNA upstream 78177 45172790 ~ 45172996 (+) True G1453990
TU1663605 lncRNA upstream 156889 45093095 ~ 45094284 (+) True G1453915
TU1663769 lncRNA downstream 33582 45288391 ~ 45288620 (+) True G1454074
TU1663775 lncRNA downstream 41363 45296172 ~ 45296377 (+) True G1454080
TU1663779 lncRNA downstream 46326 45301135 ~ 45301478 (+) True G1454084
TU1663782 lncRNA downstream 49660 45304469 ~ 45304717 (+) True G1454087
TU1663785 lncRNA downstream 51523 45306332 ~ 45306619 (+) True G1454090
XM_036949966.1 mRNA upstream 163424 45079606 ~ 45087749 (+) True LOC110493949
XM_021568567.2 mRNA upstream 181762 45063682 ~ 45069411 (+) False LOC110493947
XM_021568568.2 mRNA upstream 181762 45063686 ~ 45069411 (+) True LOC110493947
XM_021568566.2 mRNA upstream 222081 44969478 ~ 45029092 (+) True LOC110493946
XM_036949964.1 mRNA upstream 330158 44903941 ~ 44921015 (+) True LOC110493942
trnaq-uug-4 mRNA downstream 98669 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_021568582.2 mRNA downstream 263917 45518726 ~ 45526398 (+) True LOC110493956
NM_001129986.1 mRNA downstream 312445 45567254 ~ 45572753 (+) True e3
XM_021568597.2 mRNA downstream 498960 45753769 ~ 45827044 (+) True LOC110493964
XM_021568602.2 mRNA downstream 909669 46164478 ~ 46232702 (+) False dlgap4b
TU1663604 other upstream 180248 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 200168 45050729 ~ 45051005 (+) True G1453889
TU1663269 other upstream 396434 44835997 ~ 44854739 (+) True G1453605
TU1662359 other upstream 730696 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 1644392 43606313 ~ 43606781 (+) True G1452399
TU1663743 other downstream 3666 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 80485 45335294 ~ 45336523 (+) True G1454127
TU1664577 other downstream 601440 45856249 ~ 45858501 (+) True G1454824
TU1666430 other downstream 1973410 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 2550549 47805358 ~ 47807481 (+) True LOC100135862

Expression Profile