RNA id: TU1663795



Basic Information


Item Value
RNA id TU1663795
length 231
lncRNA type intronic
GC content 0.42
exon number 1
gene id G1454100
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45313717 ~ 45313947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acaaggttgttgatccatcctcagttttctcctatcacagccattaaactctgtaactgttttaaagtcacaattggcctcatagtgaaatgcctgagtggtttccttcctctctggcaactgagttaggaaggacgcctgtaactttgtagtgactgggtgtattggtacaccACCCAAAGTGGAGTTCATAATTTTGCCATGCTCAAAAgatgttcaatgtctgctttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1663793 lncRNA upstream 750 45312763 ~ 45312967 (+) True G1454098
TU1663792 lncRNA upstream 1463 45311970 ~ 45312254 (+) True G1454097
TU1663791 lncRNA upstream 1842 45311603 ~ 45311875 (+) True G1454096
TU1663785 lncRNA upstream 7098 45306332 ~ 45306619 (+) True G1454090
TU1663782 lncRNA upstream 9000 45304469 ~ 45304717 (+) True G1454087
TU1663797 lncRNA downstream 2439 45316386 ~ 45316588 (+) True G1454102
TU1663799 lncRNA downstream 5993 45319940 ~ 45320141 (+) True G1454104
TU1663800 lncRNA downstream 6223 45320170 ~ 45320487 (+) True G1454105
TU1663811 lncRNA downstream 9594 45323541 ~ 45323747 (+) True G1454116
TU1663814 lncRNA downstream 12374 45326321 ~ 45327359 (+) False G1454118
XM_036949966.1 mRNA upstream 225968 45079606 ~ 45087749 (+) True LOC110493949
XM_021568567.2 mRNA upstream 244306 45063682 ~ 45069411 (+) False LOC110493947
XM_021568568.2 mRNA upstream 244306 45063686 ~ 45069411 (+) True LOC110493947
XM_021568566.2 mRNA upstream 284625 44969478 ~ 45029092 (+) True LOC110493946
XM_036949964.1 mRNA upstream 392702 44903941 ~ 44921015 (+) True LOC110493942
trnaq-uug-4 mRNA downstream 39531 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_021568582.2 mRNA downstream 204779 45518726 ~ 45526398 (+) True LOC110493956
NM_001129986.1 mRNA downstream 253307 45567254 ~ 45572753 (+) True e3
XM_021568597.2 mRNA downstream 439822 45753769 ~ 45827044 (+) True LOC110493964
XM_021568602.2 mRNA downstream 850531 46164478 ~ 46232702 (+) False dlgap4b
TU1663743 other upstream 54146 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 242792 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 262712 45050729 ~ 45051005 (+) True G1453889
TU1663269 other upstream 458978 44835997 ~ 44854739 (+) True G1453605
TU1662359 other upstream 793240 44513069 ~ 44520477 (+) True G1452804
TU1663824 other downstream 21347 45335294 ~ 45336523 (+) True G1454127
TU1664577 other downstream 542302 45856249 ~ 45858501 (+) True G1454824
TU1666430 other downstream 1914272 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 2491411 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 2519633 47833580 ~ 47839370 (+) True G1456969

Expression Profile