RNA id: TU1663815



Basic Information


Item Value
RNA id TU1663815
length 572
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G1454118
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45326321 ~ 45327491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCGTACAACTTTTTCCAAGACCAAATTGCCCTTAATCCGTTTTGTCGTCGTCAATCtcttgaaaataaattcattccCATGTTGACTTGTGGTATGAGATACTGTGTAATAACTGCGTTATATAAATATCCGCATGTGATCGACTCGAAACGTCCAAACTATCACGCCCAAGGAAGGTTCTAAATGTTGGCTGGTGAGCTGATACTGATAGCTAGCGTGGCTAGATGGCTGGTTAACCCTAAATTGGTGTATCAAGTTCAGGCGATATATCAACTATATTCAGACCGAACGCGACTGCAATTAACGAATACGGCTAGTAATACTGGTTACGATGTTTACCTTGTTCGCTCTACAAACGGCGAATTCTATAGAATAGCTATGATAGACGAGAAATCCCCTGGCCAGACCCTAAATAGATGGCCATTACTTTTTGGTATGCCCCGCCCCCGGACTTCGACAAAATGGGATATTTTCTCCAAGCCTCTCCAATAACCAATCAAAGGTGTAATCTGCGTGTATCCCGTGTATCTCGTGTTTTGGTTGGTGACGGTTTACACCAGCCCTGCTTTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1663811 lncRNA upstream 3173 45323541 ~ 45323747 (+) True G1454116
TU1663800 lncRNA upstream 6433 45320170 ~ 45320487 (+) True G1454105
TU1663799 lncRNA upstream 6779 45319940 ~ 45320141 (+) True G1454104
TU1663797 lncRNA upstream 10332 45316386 ~ 45316588 (+) True G1454102
TU1663795 lncRNA upstream 12973 45313717 ~ 45313947 (+) True G1454100
TU1663816 lncRNA downstream 827 45328318 ~ 45328613 (+) True G1454119
TU1663819 lncRNA downstream 3273 45330764 ~ 45330963 (+) True G1454122
TU1663821 lncRNA downstream 4390 45331881 ~ 45332102 (+) True G1454124
TU1663822 lncRNA downstream 5904 45333395 ~ 45333614 (+) True G1454125
TU1663825 lncRNA downstream 9104 45336595 ~ 45336798 (+) True G1454128
XM_036949966.1 mRNA upstream 239171 45079606 ~ 45087749 (+) True LOC110493949
XM_021568567.2 mRNA upstream 257509 45063682 ~ 45069411 (+) False LOC110493947
XM_021568568.2 mRNA upstream 257509 45063686 ~ 45069411 (+) True LOC110493947
XM_021568566.2 mRNA upstream 297828 44969478 ~ 45029092 (+) True LOC110493946
XM_036949964.1 mRNA upstream 405905 44903941 ~ 44921015 (+) True LOC110493942
trnaq-uug-4 mRNA downstream 25987 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_021568582.2 mRNA downstream 191235 45518726 ~ 45526398 (+) True LOC110493956
NM_001129986.1 mRNA downstream 239763 45567254 ~ 45572753 (+) True e3
XM_021568597.2 mRNA downstream 426278 45753769 ~ 45827044 (+) True LOC110493964
XM_021568602.2 mRNA downstream 836987 46164478 ~ 46232702 (+) False dlgap4b
TU1663743 other upstream 67349 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 255995 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 275915 45050729 ~ 45051005 (+) True G1453889
TU1663269 other upstream 472181 44835997 ~ 44854739 (+) True G1453605
TU1662359 other upstream 806443 44513069 ~ 44520477 (+) True G1452804
TU1663824 other downstream 7803 45335294 ~ 45336523 (+) True G1454127
TU1664577 other downstream 528758 45856249 ~ 45858501 (+) True G1454824
TU1666430 other downstream 1900728 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 2477867 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 2506089 47833580 ~ 47839370 (+) True G1456969

Expression Profile