RNA id: TU1663827


Basic Information

Item Value
RNA id TU1663827
length 224
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1454130
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45338855 ~ 45339078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAAGATGAAATGCCCTTACAAgtatgactttttgcaaatccaatcagttttccacctTGATTCAACATCACAGCTGTTTAAAGAAAACCGAGCCATGGATTACAGTTCCTCCTGGTCAATATACTACGTTCAGGGTGAGCAACCATCTAACATAATGTTGTCAAATTCTGAACTTACCCTTTAATGTTGTCCTTTAACTATGCTCAATCAAGgtttatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1663826 lncRNA upstream 146 45336949 ~ 45338709 (+) True G1454129
TU1663825 lncRNA upstream 2057 45336595 ~ 45336798 (+) True G1454128
TU1663822 lncRNA upstream 5241 45333395 ~ 45333614 (+) True G1454125
TU1663821 lncRNA upstream 6753 45331881 ~ 45332102 (+) True G1454124
TU1663819 lncRNA upstream 7892 45330764 ~ 45330963 (+) True G1454122
TU1663888 lncRNA downstream 96755 45435833 ~ 45436511 (+) True G1454189
TU1663805 lncRNA downstream 109443 45448521 ~ 45448758 (+) True G1454110
TU1663804 lncRNA downstream 112040 45451118 ~ 45451368 (+) True G1454109
TU1663807 lncRNA downstream 114627 45453705 ~ 45454517 (+) True G1454112
TU1663809 lncRNA downstream 144832 45483910 ~ 45491063 (+) True G1454114
XM_036949966.1 mRNA upstream 251106 45079606 ~ 45087749 (+) True LOC110493949
XM_021568567.2 mRNA upstream 269444 45063682 ~ 45069411 (+) False LOC110493947
XM_021568568.2 mRNA upstream 269444 45063686 ~ 45069411 (+) True LOC110493947
XM_021568566.2 mRNA upstream 309763 44969478 ~ 45029092 (+) True LOC110493946
XM_036949964.1 mRNA upstream 417840 44903941 ~ 44921015 (+) True LOC110493942
trnaq-uug-4 mRNA downstream 14400 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_021568582.2 mRNA downstream 179648 45518726 ~ 45526398 (+) True LOC110493956
NM_001129986.1 mRNA downstream 228176 45567254 ~ 45572753 (+) True e3
XM_021568597.2 mRNA downstream 414691 45753769 ~ 45827044 (+) True LOC110493964
XM_021568602.2 mRNA downstream 825400 46164478 ~ 46232702 (+) False dlgap4b
TU1663824 other upstream 2332 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 79284 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 267930 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 287850 45050729 ~ 45051005 (+) True G1453889
TU1663269 other upstream 484116 44835997 ~ 44854739 (+) True G1453605
TU1664577 other downstream 517171 45856249 ~ 45858501 (+) True G1454824
TU1666430 other downstream 1889141 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 2466280 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 2494502 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 2691836 48030914 ~ 48036583 (+) True glrx

Expression Profile