RNA id: TU1663805



Basic Information


Item Value
RNA id TU1663805
length 238
lncRNA type intronic
GC content 0.36
exon number 1
gene id G1454110
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45448521 ~ 45448758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGAGTTGGAAAAAAGGTGTTTAtgcattgataagcacaccaaaAGATGGCATTGACAATAAGTAATAAAATAGAGATGGTACTATCACATCATAGCCTGCTTTATTAGCAATATAACTTTTCCTTCATTTTGATTTCGGCACAAATGAAAAAATGTGGCACTGACTTGCCCATTGATTGATGTTTCAGCACTGTATACAGTGAGGGacaaagtatttgatcccctgctgattttgta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1663888 lncRNA upstream 12010 45435833 ~ 45436511 (+) True G1454189
TU1663827 lncRNA upstream 109443 45338855 ~ 45339078 (+) True G1454130
TU1663826 lncRNA upstream 109812 45336949 ~ 45338709 (+) True G1454129
TU1663825 lncRNA upstream 111723 45336595 ~ 45336798 (+) True G1454128
TU1663822 lncRNA upstream 114907 45333395 ~ 45333614 (+) True G1454125
TU1663804 lncRNA downstream 2360 45451118 ~ 45451368 (+) True G1454109
TU1663807 lncRNA downstream 4947 45453705 ~ 45454517 (+) True G1454112
TU1663809 lncRNA downstream 35152 45483910 ~ 45491063 (+) True G1454114
TU1663951 lncRNA downstream 145622 45594380 ~ 45594636 (+) True G1454248
TU1664301 lncRNA downstream 162358 45611116 ~ 45611409 (+) True G1454554
trnaq-uug-4 mRNA upstream 94972 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_036949966.1 mRNA upstream 360772 45079606 ~ 45087749 (+) True LOC110493949
XM_021568567.2 mRNA upstream 379110 45063682 ~ 45069411 (+) False LOC110493947
XM_021568568.2 mRNA upstream 379110 45063686 ~ 45069411 (+) True LOC110493947
XM_021568566.2 mRNA upstream 419429 44969478 ~ 45029092 (+) True LOC110493946
XM_021568582.2 mRNA downstream 69968 45518726 ~ 45526398 (+) True LOC110493956
NM_001129986.1 mRNA downstream 118496 45567254 ~ 45572753 (+) True e3
XM_021568597.2 mRNA downstream 305011 45753769 ~ 45827044 (+) True LOC110493964
XM_021568602.2 mRNA downstream 715720 46164478 ~ 46232702 (+) False dlgap4b
XM_021568600.2 mRNA downstream 715720 46164478 ~ 46239382 (+) False dlgap4b
TU1663824 other upstream 111998 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 188950 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 377596 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 397516 45050729 ~ 45051005 (+) True G1453889
TU1663269 other upstream 593782 44835997 ~ 44854739 (+) True G1453605
TU1664577 other downstream 407491 45856249 ~ 45858501 (+) True G1454824
TU1666430 other downstream 1779461 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 2356600 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 2384822 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 2582156 48030914 ~ 48036583 (+) True glrx

Expression Profile