RNA id: TU1663807



Basic Information


Item Value
RNA id TU1663807
length 813
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1454112
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45453705 ~ 45454517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCCCCAATGTACATGTCAACACAATTAAGTAGAGTATTTAAGTATTAAGTGCATCCACCAGATGTACTGTAAATACATGACCACATATGTACTGTCATGCACAGGCCCAATTGATCAATCACTTCAAAATGAGAAAATGTAATCTCAGAGTAATCCTTAAATCCTGTCTTGAGCGGCTCAAACTGCAACAGCTGGACGGAATGTGTTTAACTTGGCTTTTAATTGATGTCATTATTGCATCACtgtgttgaaaaacaaacatCTGCACTGTGATAGGGGATAACGGTGACCAGATTTAGTTTGGTTTAGTGAGTCATTGTTGCCGTTGGCTGCCAAATTCTGTCAGGATTAAGAACCACCTAAAGATCCCTGTTGAATAAGTGATGTGCAAGCATCTTCACAGCTTTGAGTTACATGGAAACTTATCAAAATATGGGAGAAATATTCATTTATCTGATTAAATTGGGAATTAGGATGCAGTTTATATGAAAACCTTCACACCACATCAACTCTGGTATAAGCAAAAGCTCAAATAACATTTTCAGCCAATTTATTATTCCAAGTAGTTAAGTTAAAAAGGCTCAAAGATTGCAAGTTAAGGTTTCCATTAGACTGCGAAGACAATAATTGTCATTCCTCATGGACAGTCAGTATGGGCCTTTTTCCAAAGGGATTAAACAAGTATTCTCCCCAAAGCCTATGCATACAACCTCAGAAATCAAAACCCCTTTATGAATAAGAATTATAAAAGCTACTTCTCAAAAACACTACCATGGAAACACCTTCCCAATACATCAACAGATCAGTAGCATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1663804 lncRNA upstream 2337 45451118 ~ 45451368 (+) True G1454109
TU1663805 lncRNA upstream 4947 45448521 ~ 45448758 (+) True G1454110
TU1663888 lncRNA upstream 17194 45435833 ~ 45436511 (+) True G1454189
TU1663827 lncRNA upstream 114627 45338855 ~ 45339078 (+) True G1454130
TU1663826 lncRNA upstream 114996 45336949 ~ 45338709 (+) True G1454129
TU1663809 lncRNA downstream 29393 45483910 ~ 45491063 (+) True G1454114
TU1663951 lncRNA downstream 139863 45594380 ~ 45594636 (+) True G1454248
TU1664301 lncRNA downstream 156599 45611116 ~ 45611409 (+) True G1454554
TU1664308 lncRNA downstream 160897 45615414 ~ 45615646 (+) True G1454561
TU1664361 lncRNA downstream 212404 45666921 ~ 45713858 (+) True G1454613
trnaq-uug-4 mRNA upstream 100156 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_036949966.1 mRNA upstream 365956 45079606 ~ 45087749 (+) True LOC110493949
XM_021568567.2 mRNA upstream 384294 45063682 ~ 45069411 (+) False LOC110493947
XM_021568568.2 mRNA upstream 384294 45063686 ~ 45069411 (+) True LOC110493947
XM_021568566.2 mRNA upstream 424613 44969478 ~ 45029092 (+) True LOC110493946
XM_021568582.2 mRNA downstream 64209 45518726 ~ 45526398 (+) True LOC110493956
NM_001129986.1 mRNA downstream 112737 45567254 ~ 45572753 (+) True e3
XM_021568597.2 mRNA downstream 299252 45753769 ~ 45827044 (+) True LOC110493964
XM_021568602.2 mRNA downstream 709961 46164478 ~ 46232702 (+) False dlgap4b
XM_021568600.2 mRNA downstream 709961 46164478 ~ 46239382 (+) False dlgap4b
TU1663824 other upstream 117182 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 194134 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 382780 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 402700 45050729 ~ 45051005 (+) True G1453889
TU1663269 other upstream 598966 44835997 ~ 44854739 (+) True G1453605
TU1664577 other downstream 401732 45856249 ~ 45858501 (+) True G1454824
TU1666430 other downstream 1773702 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 2350841 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 2379063 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 2576397 48030914 ~ 48036583 (+) True glrx

Expression Profile