RNA id: TU1664577


Basic Information

Item Value
RNA id TU1664577
length 2253
RNA type TUCP
GC content 0.42
exon number 1
gene id G1454824
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45856249 ~ 45858501 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaataatgaaaccgTCAGCCCAAGAGTCTTGACTGTCGGACCGAGTGCTTGAATCATACCGAGAATACTGTGTCTTTATATACCAAACTTAAAAATGCTTCAACCATGGCTGGCTCCACCATTCCCAGATAGATTGGGGGCGCACCATGAGCCACTTTGGGCTCATCCTGTCTTTATCTGCCCCTGGCGTTATCTTAACCCCTGACCCTGGCCTCATTTCCCAGGCCAGGATGTCTAAGGACCACTGAGGCCTTtgttctactcctctctctcccagctaaACATACACCGTATCTTGTCTATGGAATGCAGGCTCACTCAGACCAGAGACATATGTCTCACATGAACCACTAATCATAGAATGGAATGTGGATATTTGGTTTCTTATCACCGAGACATCAATCAGTTGTCAGCTTCAAGCCATTTCTAGTAAAAACCCATGTACTTGACACCCAGACTAGCTGCAGGAAGCTGGAGTTGACACCATAAAACTCAgcattagcaggacagaaataccttactgtttgttaagtaaataaaaatgaaatatccACCAAATAAGGTGAATACATAATATTTCTATCACAAGGTCCATTTGTAAGAACCAACTATCAGAACCTAACCAGAACCAGACCATTACATCCAGATGTCCTGCTCAAAATGAATTATTGCATTTGTTTGCATTTTCCCCCTGGATCTGATTTACGTTAGCATTTTGCATGGTATGTCAAATTATGGATTACTACCTTTTCTCAATGAGGTTAAACCTCCCTGAAATAACTGAACCAAGGCCGGGGGCCTGTTTTTTAATCAGAATGCACATTGGCAGTATGGCGGAATGGCACCCCAATTCTTCATGGCATCATCATTCAGTGGAAAACAATAAGATgtgcactaccattcaaaagtttgtggtcacttagaaatgttcttgtttttgcccattaaaataacatcaaattgatcagaaataatgtagacattgttaatgttgtaaatgactatagctggaaacaacagattttttatggaatatctacatacagtaggcgtacagaagcccattatcagcaaccagcactcctgtgttccaatggcacgttgtgttagcttatccaagtttatcattttaaaaggctaattgatcgttagaaaacttttttgcaattatgttagcacagcggaaaactgtccttctttagactagttgagtatcaggagcatcagcatttgtgggttcaattgcaggctcaaaatggccagaaacaaacaactttcttctgaaacttgtcagtctattattattctgttactattccatgagagaaattgccaagaaactgaagatctcgtacaacgctgtgtactactcccttcacagaacagagcaaacgggctctaaccagaatagaaagaggagtgggaggccccggtgcacaactgagcaagaggacaagtacattagagtgtctagtttgagaaacagacgcctcacaagtccttaactgacagcttcattaaatagtacccgcaaaacaccagtctcaatgtcaacagtgaagaggcagagttgcaaagaaaaatccatatcttagactggccaataaaataaaagattaagatgggcaaaataacacagacactggacagaggaagattgggaaaaaaaatgtatggacagactaatctatgtttgaggtgttcggatcacaaagaacattcgtgagatgcagaaGAAATGAAAaaatgctggaggagtgcttgaagccatctgtcaagcatggtgtaggcaatgtgatggtctgggggtgctttggtggtggtaaagtgggagatttgcaCAGgataaaagggatcttgaagaaggaaggccatcactccattttgcatagCCATGCCATActctgtggacggcgcttaattggagccaatttcctccaacaggacaatgacccaaagcacagctccaaaccatgcaataactatttaaggaagaagcagtcagctggtattctgtctataatggagtggccaggacagtcaccggatctcaaccccattgagttgttgtgggagcagcttgaccgtatggtacgtaagaagtgtccatcaagccaatccaacttgtgggatgTGCTTCAAGGAGCAAGGGGTGAAATCtattcagattacctcaacaaattgacaactagaatgccaaaggtctgcatggctgtacagtgccttgcgaaagtattcggcccccttgaact

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1664459 lncRNA upstream 130910 45725053 ~ 45725339 (+) True G1454708
TU1664448 lncRNA upstream 135862 45719547 ~ 45720387 (+) True G1454697
TU1664361 lncRNA upstream 142391 45666921 ~ 45713858 (+) True G1454613
TU1664370 lncRNA upstream 171529 45675969 ~ 45684720 (+) True G1454621
TU1664308 lncRNA upstream 240603 45615414 ~ 45615646 (+) True G1454561
TU1664582 lncRNA downstream 9973 45868474 ~ 45869883 (+) True G1454827
TU1664714 lncRNA downstream 193998 46052499 ~ 46052705 (+) True G1454953
TU1664722 lncRNA downstream 204023 46062524 ~ 46062740 (+) True G1454961
TU1664727 lncRNA downstream 210123 46068624 ~ 46068839 (+) True G1454966
TU1664739 lncRNA downstream 229055 46087556 ~ 46087770 (+) True G1454977
XM_021568597.2 mRNA upstream 29205 45753769 ~ 45827044 (+) True LOC110493964
NM_001129986.1 mRNA upstream 283496 45567254 ~ 45572753 (+) True e3
XM_021568582.2 mRNA upstream 329851 45518726 ~ 45526398 (+) True LOC110493956
trnaq-uug-4 mRNA upstream 502700 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_036949966.1 mRNA upstream 768500 45079606 ~ 45087749 (+) True LOC110493949
XM_021568602.2 mRNA downstream 305977 46164478 ~ 46232702 (+) False dlgap4b
XM_021568600.2 mRNA downstream 305977 46164478 ~ 46239382 (+) False dlgap4b
XM_036949984.1 mRNA downstream 305977 46164478 ~ 46239382 (+) True dlgap4b
XM_021568605.2 mRNA downstream 385260 46243761 ~ 46252957 (+) False LOC110493969
XM_036949985.1 mRNA downstream 385365 46243866 ~ 46252957 (+) False LOC110493969
TU1663824 other upstream 519726 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 596678 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 785324 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 805244 45050729 ~ 45051005 (+) True G1453889
TU1663269 other upstream 1001510 44835997 ~ 44854739 (+) True G1453605
TU1666430 other downstream 1369718 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 1946857 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 1975079 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 2172413 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 2530581 48389082 ~ 48424405 (+) False LOC110494013

Expression Profile