RNA id: TU1664727


Basic Information

Item Value
RNA id TU1664727
length 216
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G1454966
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 46068624 ~ 46068839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCATAAattgctccaccatttcctggttgcaaaaattctaatagtttgcctaatttcagttcatGTCACAAAAGAAGCAAGCAtactgtagagaatcattgtacaatCTAAACCGCTGTGTAATATTTTCCatcaccaaaaatattgtattttcagctgtttgaagctggtgtacagaACTGAAAGTAAACAACTCAAAAACAAAATGTAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1664722 lncRNA upstream 5884 46062524 ~ 46062740 (+) True G1454961
TU1664714 lncRNA upstream 15919 46052499 ~ 46052705 (+) True G1454953
TU1664582 lncRNA upstream 198741 45868474 ~ 45869883 (+) True G1454827
TU1664459 lncRNA upstream 343285 45725053 ~ 45725339 (+) True G1454708
TU1664448 lncRNA upstream 348237 45719547 ~ 45720387 (+) True G1454697
TU1664739 lncRNA downstream 18717 46087556 ~ 46087770 (+) True G1454977
TU1664741 lncRNA downstream 20645 46089484 ~ 46089696 (+) True G1454979
TU1664746 lncRNA downstream 25446 46094285 ~ 46094485 (+) True G1454984
TU1664800 lncRNA downstream 89795 46158634 ~ 46159039 (+) True G1455038
TU1664801 lncRNA downstream 91958 46160797 ~ 46161020 (+) True G1455039
XM_021568597.2 mRNA upstream 241580 45753769 ~ 45827044 (+) True LOC110493964
NM_001129986.1 mRNA upstream 495871 45567254 ~ 45572753 (+) True e3
XM_021568582.2 mRNA upstream 542226 45518726 ~ 45526398 (+) True LOC110493956
trnaq-uug-4 mRNA upstream 715075 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_036949966.1 mRNA upstream 980875 45079606 ~ 45087749 (+) True LOC110493949
XM_021568602.2 mRNA downstream 95639 46164478 ~ 46232702 (+) False dlgap4b
XM_021568600.2 mRNA downstream 95639 46164478 ~ 46239382 (+) False dlgap4b
XM_036949984.1 mRNA downstream 95639 46164478 ~ 46239382 (+) True dlgap4b
XM_021568605.2 mRNA downstream 174922 46243761 ~ 46252957 (+) False LOC110493969
XM_036949985.1 mRNA downstream 175027 46243866 ~ 46252957 (+) False LOC110493969
TU1664577 other upstream 210123 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 732101 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 809053 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 997699 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 1017619 45050729 ~ 45051005 (+) True G1453889
TU1666430 other downstream 1159380 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 1736519 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 1764741 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 1962075 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 2320243 48389082 ~ 48424405 (+) False LOC110494013

Expression Profile