RNA id: TU1664739


Basic Information

Item Value
RNA id TU1664739
length 215
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1454977
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 46087556 ~ 46087770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATtgacagagaagagaacagagctTAACTCACAGTACTTTTGTCACCCTACAGACGTTCATGCAGGTCAGACATTTTGATTCCTGCAACTTATGGAAAAGAGACCATTTTAATGTTTCTTAAACATCTAAACAACTCTCAAAGTTGAGCAGGTCGGCTCTATTTTCAAACATCACTTTCATTGTAGAATAACTTCAATTCTGTGCGTTCCACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1664727 lncRNA upstream 18717 46068624 ~ 46068839 (+) True G1454966
TU1664722 lncRNA upstream 24816 46062524 ~ 46062740 (+) True G1454961
TU1664714 lncRNA upstream 34851 46052499 ~ 46052705 (+) True G1454953
TU1664582 lncRNA upstream 217673 45868474 ~ 45869883 (+) True G1454827
TU1664459 lncRNA upstream 362217 45725053 ~ 45725339 (+) True G1454708
TU1664741 lncRNA downstream 1714 46089484 ~ 46089696 (+) True G1454979
TU1664746 lncRNA downstream 6515 46094285 ~ 46094485 (+) True G1454984
TU1664800 lncRNA downstream 70864 46158634 ~ 46159039 (+) True G1455038
TU1664801 lncRNA downstream 73027 46160797 ~ 46161020 (+) True G1455039
TU1664802 lncRNA downstream 74532 46162302 ~ 46162503 (+) True G1455040
XM_021568597.2 mRNA upstream 260512 45753769 ~ 45827044 (+) True LOC110493964
NM_001129986.1 mRNA upstream 514803 45567254 ~ 45572753 (+) True e3
XM_021568582.2 mRNA upstream 561158 45518726 ~ 45526398 (+) True LOC110493956
trnaq-uug-4 mRNA upstream 734007 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_036949966.1 mRNA upstream 999807 45079606 ~ 45087749 (+) True LOC110493949
XM_021568602.2 mRNA downstream 76708 46164478 ~ 46232702 (+) False dlgap4b
XM_021568600.2 mRNA downstream 76708 46164478 ~ 46239382 (+) False dlgap4b
XM_036949984.1 mRNA downstream 76708 46164478 ~ 46239382 (+) True dlgap4b
XM_021568605.2 mRNA downstream 155991 46243761 ~ 46252957 (+) False LOC110493969
XM_036949985.1 mRNA downstream 156096 46243866 ~ 46252957 (+) False LOC110493969
TU1664577 other upstream 229055 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 751033 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 827985 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 1016631 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 1036551 45050729 ~ 45051005 (+) True G1453889
TU1666430 other downstream 1140449 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 1717588 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 1745810 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 1943144 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 2301312 48389082 ~ 48424405 (+) False LOC110494013

Expression Profile