RNA id: TU1665654



Basic Information


Item Value
RNA id TU1665654
length 216
lncRNA type intronic
GC content 0.45
exon number 1
gene id G1455837
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 46628522 ~ 46628737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGCTCTTGCCTTCAAGCCATTATATGCAGAGAAGAGCCTAGATCTTACCCTGACAAAGAAAGAGGGAGCTGCgtcgagatggagggagagggaaaagaagAGCGCGAGATGGGAAAGAGTGGACGAGACTGCAAAAAAATGCTCATTTCGGCCAATAAATGCAACTTCAATCTTCTCAGGCCAGAATTCCTAGTAACATAACATTCATTTGAACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1665626 lncRNA upstream 23455 46603556 ~ 46605067 (+) True G1455810
TU1665620 lncRNA upstream 27481 46600723 ~ 46601041 (+) True G1455806
TU1665613 lncRNA upstream 28357 46600008 ~ 46600165 (+) True G1455800
TU1665482 lncRNA upstream 159060 46469203 ~ 46469462 (+) True G1455679
TU1665472 lncRNA upstream 164922 46463386 ~ 46463600 (+) True G1455669
TU1665656 lncRNA downstream 2172 46630909 ~ 46631116 (+) True G1455839
TU1665664 lncRNA downstream 22896 46651633 ~ 46651833 (+) True G1455847
TU1665665 lncRNA downstream 23335 46652072 ~ 46652650 (+) True G1455848
TU1665666 lncRNA downstream 24564 46653301 ~ 46653553 (+) True G1455849
TU1665667 lncRNA downstream 26305 46655042 ~ 46655265 (+) True G1455850
XM_021568613.2 mRNA upstream 191996 46376260 ~ 46436526 (+) False LOC110493975
XM_021568614.2 mRNA upstream 191996 46376260 ~ 46436526 (+) True LOC110493975
XM_021568611.2 mRNA upstream 252535 46363032 ~ 46375987 (+) True tpra1
XM_021568609.2 mRNA upstream 267488 46353930 ~ 46361034 (+) False LOC110493973
XM_021568621.2 mRNA downstream 480986 47109723 ~ 47134585 (+) False LOC110493980
XM_021568622.2 mRNA downstream 480986 47109723 ~ 47134585 (+) False LOC110493980
XM_021568623.2 mRNA downstream 480986 47109723 ~ 47134585 (+) True LOC110493980
XM_021568624.2 mRNA downstream 506427 47135164 ~ 47136870 (+) True LOC110493981
XM_021568627.2 mRNA downstream 658190 47286927 ~ 47308189 (+) False LOC110493983
TU1664577 other upstream 770021 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 1291999 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 1368951 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 1557597 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 1577517 45050729 ~ 45051005 (+) True G1453889
TU1666430 other downstream 599482 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 1176621 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 1204843 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 1402177 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 1760345 48389082 ~ 48424405 (+) False LOC110494013

Expression Profile