RNA id: TU1665671



Basic Information


Item Value
RNA id TU1665671
length 215
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1455854
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 46662084 ~ 46662298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGTGCTCGATGCCATCACGGCCCTAATGGAAGTTAGGCTGTCACGAGATAacactcccctctttctctcgcttttcAGTTTGGTGTTTTTTGAGGCGTGTCGGAACGATGGGGGGATGTGATAACGTTAGGGGAAGAGGGATGGACGAAAGGAATAGGGGAGATTATGTTTTAAATAAGTGATATGTTGCCTCTCAATCATGCCTTGTCTGTAT

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1665670 lncRNA upstream 3948 46657889 ~ 46658136 (+) True G1455853
TU1665669 lncRNA upstream 5545 46656309 ~ 46656539 (+) True G1455852
TU1665668 lncRNA upstream 5843 46656041 ~ 46656241 (+) True G1455851
TU1665667 lncRNA upstream 6819 46655042 ~ 46655265 (+) True G1455850
TU1665666 lncRNA upstream 8531 46653301 ~ 46653553 (+) True G1455849
TU1665680 lncRNA downstream 3690 46665988 ~ 46666261 (+) True G1455863
TU1665711 lncRNA downstream 73568 46735866 ~ 46758496 (+) False G1455891
TU1665712 lncRNA downstream 73568 46735866 ~ 46736819 (+) True G1455891
TU1665979 lncRNA downstream 241628 46903926 ~ 46904187 (+) True G1456151
TU1666050 lncRNA downstream 315071 46977369 ~ 46984356 (+) True G1456220
XM_021568613.2 mRNA upstream 225558 46376260 ~ 46436526 (+) False LOC110493975
XM_021568614.2 mRNA upstream 225558 46376260 ~ 46436526 (+) True LOC110493975
XM_021568611.2 mRNA upstream 286097 46363032 ~ 46375987 (+) True tpra1
XM_021568609.2 mRNA upstream 301050 46353930 ~ 46361034 (+) False LOC110493973
XM_021568621.2 mRNA downstream 447425 47109723 ~ 47134585 (+) False LOC110493980
XM_021568622.2 mRNA downstream 447425 47109723 ~ 47134585 (+) False LOC110493980
XM_021568623.2 mRNA downstream 447425 47109723 ~ 47134585 (+) True LOC110493980
XM_021568624.2 mRNA downstream 472866 47135164 ~ 47136870 (+) True LOC110493981
XM_021568627.2 mRNA downstream 624629 47286927 ~ 47308189 (+) False LOC110493983
TU1664577 other upstream 803583 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 1325561 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 1402513 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 1591159 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 1611079 45050729 ~ 45051005 (+) True G1453889
TU1666430 other downstream 565921 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 1143060 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 1171282 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 1368616 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 1726784 48389082 ~ 48424405 (+) False LOC110494013

Expression Profile