RNA id: TU1666536


Basic Information

Item Value
RNA id TU1666536
length 1736
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1456670
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47376782 ~ 47378517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacacaaatatcccTGCTCTCCACGTACTGAAGTAACTGCACAGTAGGCAAAGCATTCTCAATCGAATTATGCACCTGCAGTAGCAGACCTCTTATAGGCTTGACTTTACCCATAATAAACCCACACCGGTCCAAAGCTAATTAGGAACTTCCTTTGAGTGATTATGGCGAACACCTGCCAAGTATGACGAGTttacggccaggtaccacacccTAATAGGGTAACCCCCCCTACAGTTGAAAGTGCACacaattataatatttttttgtatatattttattaaaataCGCAAAGTAGGTGGCCTCGTTAGATATTTCGCATATCACGGAAATCCATTTTTCTGGACACTGAATGAAGTCGGCCtaaatattttggtttcattttgTTACAACTCCAGGATCGGTATGTAAAATAAATATTGGCTCATTTTTCAGAAGAAAATGTAATCTAGAAGAAACATTTGGCAACATATCAGCAATTCCCTATGCATAAGTATGGAGAATACGTCTAAGGATAACCACACACAATTTGGTGAATGCAGATGCGTCTGAGGCTGAAAAAAATGAGTTAGCATGTGGGAAGGGTCGGACTTTCGGGAAATGGCAGTTAAAGACAAGTAGACTGAATTTAGCCtaccaacccactgggcacagatacCAATTCgccatctattccacgttggttcaaggtaatttaattgaaattacgttgaaacaacgttgattcaaccaatgTGTGCCCATGAGAAACGCCAAACACCGACATTATTTAGACCCAATTACCATCTCTTCAAAATAAGTTACTACATACAGTCCAGTTTGTAATATTGTCTATGAAATGGGTTTTTATTAAATTATGTGTGATTCAATGTTGTGAGCTTTGCAAAACTTATGATGGTAGTATGGTAAACTAACGAAAATATAAATTTTCCTCAACCTATTTTTACTTTTTAGAAATACTAATATTATTGGACTAAAATGCAAAAAAATCTCAATTGCTAGGTAGattaaaaaatgtaatttcagTTTGTGGTGCCTGACCTTAAGGGATATTATATTCTACCTCTCTCTATTTGGTGAGAAAAATGGCCAAGACATACAAATCCAACCACTCTCCATTCTCTATCATACAGCATCCATGTTAAGAAGTCCACCAAACACCATTCGTAAAGCTCATTCCCACTTGAcaaacactggttgaatcaacacaGTTTCCATGTCACTTCAACCCCACAAATCTATGTGATAACGTtgaatgtggaaaactgattggatttgcaacaAGTAATAAACATAAGggcatttcatatttttattcaCCCACATTTGAACCTAAAGCCAATGACATGGTgcattttctgtttttattttcacAGTTGAATTCAccttagttgacaactcaaccaaatgtaaatcaaaactagatgttgaccTGATGTCTGTGCCATGTGGGTTGGCTCTATGAATCTCCCCAATTCCCAGTTAACAATCAGCTTTTCAAGATCACATAATATGTGATATGACATACTATGTAAACAAATTAATCAACAATTATGTGCAATGGGGTAATACAAATCTTGGTGTGAAATTCCACAGTGGGACCATGGTCAGcttgatttaatttaatttgagtTACTTTACATATTTTGAAAATGTACAGATGATATTTCATGTATACTGCCATCCAAACAGTGAAGTGTGTCACCATTTTGCAATAAAATACTCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666533 lncRNA upstream 3969 47372689 ~ 47372813 (+) True G1456668
TU1666532 lncRNA upstream 4241 47371433 ~ 47372541 (+) True otop1
TU1666457 lncRNA upstream 129630 47246876 ~ 47247152 (+) True G1456597
TU1666399 lncRNA upstream 177197 47199377 ~ 47199585 (+) True G1456539
TU1666129 lncRNA upstream 277617 47098965 ~ 47099165 (+) True G1456293
TU1666579 lncRNA downstream 36095 47414612 ~ 47415612 (+) True G1456699
TU1666590 lncRNA downstream 47738 47426255 ~ 47478036 (+) True G1456708
TU1666703 lncRNA downstream 195815 47574332 ~ 47610240 (+) True G1456818
TU1666806 lncRNA downstream 320522 47699039 ~ 47699475 (+) True G1456912
TU1666810 lncRNA downstream 322822 47701339 ~ 47701574 (+) True G1456916
XM_021568635.2 mRNA upstream 82 47374636 ~ 47376700 (+) True LOC110493989
XM_021568634.2 mRNA upstream 4201 47365071 ~ 47372581 (+) False otop1
XM_021568632.2 mRNA upstream 14996 47352232 ~ 47361786 (+) False LOC110493987
XM_021568630.2 mRNA upstream 14996 47352247 ~ 47361786 (+) True LOC110493987
XM_021568629.2 mRNA upstream 35551 47328302 ~ 47341231 (+) True lyar
XM_021568639.2 mRNA downstream 349907 47728424 ~ 47742589 (+) False idh3b
XM_021568640.2 mRNA downstream 349907 47728424 ~ 47743582 (+) False idh3b
XM_036949991.1 mRNA downstream 349907 47728424 ~ 47743582 (+) True idh3b
XM_021568643.2 mRNA downstream 365839 47744356 ~ 47790013 (+) False LOC110493993
XM_021568644.2 mRNA downstream 365841 47744358 ~ 47790013 (+) False LOC110493993
TU1666430 other upstream 147986 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 1518281 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 2040259 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 2117211 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 2305857 45069971 ~ 45070925 (+) True G1453914
TU1666845 other downstream 426841 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 455063 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 652397 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 1010565 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 1314804 48693321 ~ 48721244 (+) False bsnb

Expression Profile