RNA id: TU1666781


Basic Information

Item Value
RNA id TU1666781
length 1294
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1456889
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47704632 ~ 47705925 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTACAGTCACTTACTCTTCTAGATGATCTGATTAGACTTTCAAGTTTTGTGTCCTGAAGTCGACTTGGCTAGCTAGTGCTAGCCAACTTCTTTCGCCAATTAGCTTCAGCCAGCTGGTGTGTGAGACCATGGTAACATTGGTTTGACATTGGATAGCCTATCTCTGGGGCTAGTTGGGGACCGTCAATAAATCACACAATGTGAatgggacaatattttcatgttgcatgtattttagttgtctcattaaatgctttcaatatgtGTATATCTATTTGTACAATTTAAAGTTAGTTTGAGGTTTTGTCATTGATTTGGAGCCATTGACATTTTaaaatattgtcccatgtacattgtTTAATTTACTAATGGTCCCTAACTAGCCTGACAGTGAAATCgaatgtcaaaccaaattgaccatGGCCTTTCCAATCAAATGATCAGGGGGTGCAGCTGTGCTCCGAATTGATGATTACTTGggtgctgccagctgtgggcagGATAACCCAATAAAAACTGTTACAGTACCCTTCATTCCCTGACATACCATTTTTTCCCCCTATCATCTCACCTATCTCTGTTTTGGGCTGACTTTATGATCAAtatgatcctatttacactttgtagtcaattttgagaCTAGAATAAAGGTTTCTGACCCATATCGATGTTTTCAAAACAAGAAGTTGGTTTTTAGGGGCAGTTGCTCTTTAACATTGTGAAACGTAAGGAAATCCCTCAACTGCGTAACACATAGTGGGCCTTAAACAATCATGAACTGTGAAGTTAACTGTAGCAGTTTATAAACATCGTCATCATctttaaataataataacaatacttCCATAGTGTGTCCCAAACGGTATCGTTTCCAGCAAACCATATTGTTATTATAATAGCAGTTCCTAAACTGCTGATTACATTAATATAGCTACAGATTCAGCGATTAAACAAACACAAACATGCTACACACTTCCACTTTTCCCCATCTGAATGCTGCTGAGGAATCTCTCTcagataaaaaaacaaaacaaatccatCTTATTTAAATACCAGAATTCCTGGGACCCTGATGGAATTCATCAGCCCCTGGTATGTGACTCCCACCTCATGACAACAGTAACTCTGAGAAGGACCCAAACTAATCCAATATTTGAATAAAAAAAGATAAAACATTCACACATGTCAATGTAGCATCTCGTTAGAACTATTCATTTATGGGTGTTTCCTCTACCGATAGTCTTTAATCTGATCACGAAACCAACCGTAGACTTTTGCTATTGCAAGTCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666810 lncRNA upstream 3058 47701339 ~ 47701574 (+) True G1456916
TU1666806 lncRNA upstream 5157 47699039 ~ 47699475 (+) True G1456912
TU1666703 lncRNA upstream 94392 47574332 ~ 47610240 (+) True G1456818
TU1666590 lncRNA upstream 226596 47426255 ~ 47478036 (+) True G1456708
TU1666579 lncRNA upstream 289020 47414612 ~ 47415612 (+) True G1456699
TU1666780 lncRNA downstream 1771 47707696 ~ 47709766 (+) True G1456888
TU1666775 lncRNA downstream 8018 47713943 ~ 47714747 (+) True G1456883
TU1666814 lncRNA downstream 21870 47727795 ~ 47728035 (+) True G1456920
TU1666953 lncRNA downstream 271009 47976934 ~ 47977139 (+) True G1457051
TU1666995 lncRNA downstream 370441 48076366 ~ 48076682 (+) True G1457091
XM_021568635.2 mRNA upstream 327932 47374636 ~ 47376700 (+) True LOC110493989
XM_021568634.2 mRNA upstream 332051 47365071 ~ 47372581 (+) False otop1
XM_021568632.2 mRNA upstream 342846 47352232 ~ 47361786 (+) False LOC110493987
XM_021568630.2 mRNA upstream 342846 47352247 ~ 47361786 (+) True LOC110493987
XM_021568629.2 mRNA upstream 363401 47328302 ~ 47341231 (+) True lyar
XM_021568639.2 mRNA downstream 22499 47728424 ~ 47742589 (+) False idh3b
XM_021568640.2 mRNA downstream 22499 47728424 ~ 47743582 (+) False idh3b
XM_036949991.1 mRNA downstream 22499 47728424 ~ 47743582 (+) True idh3b
XM_021568643.2 mRNA downstream 38431 47744356 ~ 47790013 (+) False LOC110493993
XM_021568644.2 mRNA downstream 38433 47744358 ~ 47790013 (+) False LOC110493993
TU1666430 other upstream 475836 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 1846131 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 2368109 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 2445061 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 2633707 45069971 ~ 45070925 (+) True G1453914
TU1666845 other downstream 99433 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 127655 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 324989 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 683157 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 987396 48693321 ~ 48721244 (+) False bsnb

Expression Profile