RNA id: TU1666953


Basic Information

Item Value
RNA id TU1666953
length 206
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1457051
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47976934 ~ 47977139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttattcctgtgttctcggtttgtctgttgccaatttgtcttgtcttgtcaagcttaccagcgtgATTTTCCAAGCTCCTGTTTTTTCCTAGTCTCTGTTTTTTCTAGTGCTCCCGGTTCTGACCTCTTGCCTGCCCTGACACTAAGCCCGCCTGTCTGActattcagcctgccctgacctcgagcctgcctgccgccctgcacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666814 lncRNA upstream 248899 47727795 ~ 47728035 (+) True G1456920
TU1666775 lncRNA upstream 262187 47713943 ~ 47714747 (+) True G1456883
TU1666780 lncRNA upstream 267168 47707696 ~ 47709766 (+) True G1456888
TU1666781 lncRNA upstream 271009 47704632 ~ 47705925 (+) True G1456889
TU1666810 lncRNA upstream 275360 47701339 ~ 47701574 (+) True G1456916
TU1666995 lncRNA downstream 99227 48076366 ~ 48076682 (+) True G1457091
TU1666998 lncRNA downstream 110466 48087605 ~ 48087822 (+) True G1457093
TU1667050 lncRNA downstream 222902 48200041 ~ 48200356 (+) True G1457137
TU1667066 lncRNA downstream 288825 48265964 ~ 48266185 (+) True G1457153
TU1667067 lncRNA downstream 289407 48266546 ~ 48266927 (+) True G1457154
XM_021568647.2 mRNA upstream 5790 47938946 ~ 47971144 (+) True LOC110493995
XR_005036992.1 mRNA upstream 143654 47828715 ~ 47833280 (+) True LOC118940470
NM_001124008.1 mRNA upstream 158347 47814891 ~ 47818587 (+) True LOC100136222
NM_001124245.1 mRNA upstream 169416 47805512 ~ 47807518 (+) False LOC100135862
XM_021568643.2 mRNA upstream 186921 47744356 ~ 47790013 (+) False LOC110493993
XM_021568648.2 mRNA downstream 3842 47980981 ~ 47985604 (+) False LOC110493996
XM_036949993.1 mRNA downstream 3842 47980981 ~ 47985604 (+) True LOC110493996
XM_036949995.1 mRNA downstream 24131 48001270 ~ 48026662 (+) False LOC110493997
XM_036949994.1 mRNA downstream 24135 48001274 ~ 48026662 (+) True LOC110493997
XM_021568651.2 mRNA downstream 53753 48030892 ~ 48036585 (+) False glrx
TU1666865 other upstream 137564 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 169453 47805358 ~ 47807481 (+) True LOC100135862
TU1666430 other upstream 748138 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 2118433 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 2640411 45335294 ~ 45336523 (+) True G1454127
TU1666965 other downstream 53775 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 411943 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 716182 48693321 ~ 48721244 (+) False bsnb
TU1668190 other downstream 945668 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 951208 48928347 ~ 48938022 (+) False erc2

Expression Profile