RNA id: TU1667134



Basic Information


Item Value
RNA id TU1667134
length 755
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1457215
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48387002 ~ 48387756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGCACATCTAATGTACTTCTATGTTCATCCTTTGTACTGTATGAATTTTTTTACACTATGTTTAGaattgtgatttaaaaaaatgctttAATGTCATGTTATGACTAGTATTTATTACCTCACCCACAAGCATTTGTGGGGCTGCAGAGTTTTAAACTGAATGATGGAGAAGGAAAGAGGACTTTTTGTCTGTAGACCTCACAACAGTAACCACCACCTCGCAATTGTTTCTTCGCCACAGAGCTGTGACCTGCAATGTGCATATGAAACACATTTAGAAGAGTTGTTAAACATGAACTGAAAACAAACtatcacaaaaaaacaaaacattgcaCTTTGTGCTTGTATGTCATCTTTCCTGTCCTCTAGAGTCTCTGCCTCATCTTCTGTCTCTGGAGTAATGATCGAGTTGGTGTTGACTGAATGTCTGGCCATCATCAATATTTCCCTTTCCATTGTCATCTTTATTTGCCAGTTTCATGACACGCTTTGTTTCTAATGTGTTAACTCGATCATTTTGTTGTAGTTGTATGTTTTCTGTAATGACATTAAAAGTGAATCACTATGTCGATATGTTTATGTTACTCAGAAATACAAAAAGCTATCAAAATGTAAGTTGATCACTGCACAGGAAAAAAACTGTAGTTTCAACGTGTAGTTGTGGTGTGAGTGTTATACATTTTGGTGTTACAAAAAAGACATACGAATTTATTTTCCAGTTAGAAATAGTAGGCCATGCATCAAATAACTATTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1667133 lncRNA upstream 3019 48383731 ~ 48383983 (+) True G1457214
TU1667129 lncRNA upstream 11830 48374951 ~ 48375172 (+) True G1457210
TU1667071 lncRNA upstream 116956 48269373 ~ 48270046 (+) True G1457158
TU1667070 lncRNA upstream 118121 48268622 ~ 48268881 (+) True G1457157
TU1667069 lncRNA upstream 118910 48267876 ~ 48268092 (+) True G1457156
TU1667107 lncRNA downstream 1326 48389082 ~ 48392985 (+) True LOC110494013
TU1667104 lncRNA downstream 69064 48456820 ~ 48460888 (+) False G1457188
TU1667105 lncRNA downstream 69064 48456820 ~ 48472295 (+) True G1457188
TU1667249 lncRNA downstream 187243 48574999 ~ 48575223 (+) True G1457311
TU1668017 lncRNA downstream 220464 48608220 ~ 48609579 (+) True G1457973
XM_021568673.2 mRNA upstream 32944 48348965 ~ 48354058 (+) False tpgs2
XM_021568671.2 mRNA upstream 32944 48348986 ~ 48354058 (+) False tpgs2
XM_021568672.2 mRNA upstream 32944 48349008 ~ 48354058 (+) True tpgs2
XM_021568668.2 mRNA upstream 57556 48307825 ~ 48329446 (+) True LOC110494009
XM_036950004.1 mRNA upstream 58027 48307825 ~ 48328975 (+) False LOC110494009
XR_002469225.2 mRNA downstream 1337 48389093 ~ 48424478 (+) False LOC110494013
XR_002469226.2 mRNA downstream 1337 48389093 ~ 48424478 (+) False LOC110494013
XR_005036995.1 mRNA downstream 1337 48389093 ~ 48424478 (+) False LOC110494013
XM_021568678.2 mRNA downstream 122121 48509877 ~ 48515292 (+) True LOC110494016
XM_021568682.2 mRNA downstream 191554 48579310 ~ 48583667 (+) False LOC110494018
TU1666965 other upstream 350419 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 547632 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 579521 47805358 ~ 47807481 (+) True LOC100135862
TU1666430 other upstream 1158206 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 2528501 45856249 ~ 45858501 (+) True G1454824
TU1667106 other downstream 1326 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 305565 48693321 ~ 48721244 (+) False bsnb
TU1668190 other downstream 535051 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 540591 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 540591 48928347 ~ 48938022 (+) False erc2

Expression Profile