RNA id: TU1667105


Basic Information

Item Value
RNA id TU1667105
length 3011
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G1457188
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48456820 ~ 48472295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCAGACAAAATGTTGTACAAAGTTGGCCTTCTTCCGTTGACTGCTTTGAGTCATCTGTACAAAACACGAGGTGACATGGACGACTGCGCACAAGGAGAGGAAACGCTGTCCCAAGCAAACAACAACAATAGCAGCAAACCAAACCAAAAGTACAGAAAGACATTAAACATTCATATTATTTCATAGCCTAATAAATAAAACGATAGGAAAGCTGTTACGGGCTTTTTTGAATAAACTGAAGTTAAAATGCCCATCCCCCATATTTTTCAAAAACATTCAACGTTCTTTAAATTTTGCAATAAACAAACTGCCCATTGAGTTCATTCTCACAATCAATGCTATTACCTAATGTATAACAGGTAATATGAAGCATACTCAAAAGTCAATCAGAGGTCATCGACCAAAACCCCCACATGCCTATCAGATTCTCACAACACTCATAGTGTAAGGTAACTCTGGTCCAGAACATTGTTTGGCTGCGATCTCAAAGCTGAATGACGCCCTGGACCAGAGTTAAGTGTAAGGTGGCACCCATTGGGAAATCCTCACGGAGTGGGAGAGTGCTTAGGCTACTCACGTTCACCTGTAAAGAAATGTCAAATACTTTTTATTACTAGTTTATACATCAATCTGGAAATGTTCCATAAAATCATGCAATAAGTATATCAAAAATTAAACGTACCAAACTAAAACACTGACTTCAGAGTTAATAGCACACTGTATAAAGAGCAATAGTTATCCTATAATGTGGACAGAGTTGTTTTCAATATTTAATTCCCCCAAATCAATCATGAAAAGCCCAGATAAAATGCTCGTCTTTAAAATGCCCATGGTCTGGGATGGGTACTGGGTTGAGGTGTGCAGCTTCGATGTATACAATTTTTGTTTGTTAATTTACTTTTGTAAACACATTCTTGAAGAGACAATTATTTTTATGTTTTGTACAATCAGGTTTTTGTCTAGTCTGTCTTgaataatatataaataataataaaaaacatgGTCCAAACTGAGTGTTCTTCAGTCTATTTAACAAAGGCTCTACATGAGCCTGTGAGAATTGCAGAAAAAAAGTTCAACtgtactactgctaatactgtaTTCTAACAGTCATTGTAATTGAGTGACTTGTCATATCTGATTGGCTGATGGCAAGTCACTTCCTGGATGTCTCATGTATACAGTGAGGTCAGTAGGAAAGGTGAGCTGGTATCTGGTATTCCTACAGAGAGTATGGAAATTCCCCTGGGTTGGAGGTCGCCCCCATAGAaataggaattagaatactagaatgtgttaaaggtcagccattttggttaGGGAGTTGGTCAACTATGatttgccagtgctgtgataagatattgtgtaaaataatgGATTTGTAAAATGTATCTGCACTGTatatttgttagctagctatccaaaCAGTTTTACTGCCAATATCCACAGCCATTCACTGGCCGAAATATGTAGATGATAGgacttagacaagttgtaaatgcaacaagtacttatattgtatcatataatagCACTCTCAGATTTCCAAGAAAGCAAAAATGTTGACATTTATGGTCTGGTTACATATATGTTTGTGGCTATTTATACAGAAAAGGTGCATAAAACCCATATAAACTGTTTTTATGTTTATATAACATATTTGGTTGAAAATAATTAtattacacaatttctgatacATCACATGCCTTTGTTTTAATTTCATGCATAAGTAAAATCAGGATTATGCCTTTCATTCCAtttagactggtttggatttctccctgaccaatatgGCAGCCATTTTCACTCCATTCTGGAACTTCGAGGGTTAATGACATAACCgccctctagtaatttaataggatctctatggtcccccccaccctccccagaTACGATATGAAcatgtcattaaaaaaaatgatttacaggaaatttgctgtaaaactgcaacattatctctcagcctcatgccaaaatgtatagaataacaggaaatttgctttaaaaatgCAAAATTCTCtaagcctcatggcaaaatgtgtagaattgcatgagaTACTGCGGTACACCACTGAACTACAGGGTAGAGGGAGATGACACTGAGCACTGGGGAAGCAGGCTATCTAGGCTGTCCTTTATCCATGATCAGCTCTTGGTCACACGGTTGACTGCACCTTTTCACAAACAGACTGGAGCAGGCTGAACGATGGCTGTGCCTCTGTGTCCATGGGGAAATTACAAGGGAAAGTACTGTAACTGGGCGCTGTTTCAATTGTGCTGTATCCCTAATACCTTGCAGTCTGAAATGTAATCCTAAACTACACCTATCTCCCTTCACCTCACACAGTCCACCTTAACATTTCCCATGGCCCACAAAATCCATTGAGGGCTGTCCTTTCAGTCAGTACTGTCCATAGAGTCGAGTGTGCCTTTCTCCAGGGCTGGAGCAGAAGTGTCTACTGTCCAGATCTGAGATCTAAAGTCCCGCTCATCCAATAGGAGTGCACCAAGGCACTGCTGGGTGGAACACCAGGCATGACATGAAAGAAAAAACATTTTACAAATATTTCATCAAAAAAAGTGTGTCAAAAATATTACTCATTTTTCTATAACCCAAATGTGTTTCTTCATAAAGGCTTCCAGGGGCTATAAAGCTCTGCTTGGACTAGAAGGGAATATCAACAAAGGGAATCGGAGAGTGGCATCATCAAATGTTTACACTGAAAGCTGCCCATACATAAGCTACATTCTCCAGAAGTTAGCATACACAAATGCATGAGCTTTTCAGATCACATAGACAAATCATTGCACAAGATGCAAGGTAAAGCTTCAGTAGGTCATCTTCAACCATCCAAATGGAGTATAACTTAAATGGAGTATAACATTTGACATATAGGCTATGCATGTTTGTTCATACATCTAATTCAATACATGTAttgttcatatatatatatatatagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1667107 lncRNA upstream 63835 48389082 ~ 48392985 (+) True LOC110494013
TU1667134 lncRNA upstream 69064 48387002 ~ 48387756 (+) True G1457215
TU1667133 lncRNA upstream 72837 48383731 ~ 48383983 (+) True G1457214
TU1667129 lncRNA upstream 81648 48374951 ~ 48375172 (+) True G1457210
TU1667071 lncRNA upstream 186774 48269373 ~ 48270046 (+) True G1457158
TU1667249 lncRNA downstream 102704 48574999 ~ 48575223 (+) True G1457311
TU1668017 lncRNA downstream 135925 48608220 ~ 48609579 (+) True G1457973
TU1668033 lncRNA downstream 149139 48621434 ~ 48710016 (+) True G1457988
TU1668127 lncRNA downstream 277249 48749544 ~ 48749764 (+) True G1458072
TU1668138 lncRNA downstream 291331 48763626 ~ 48763825 (+) True G1458083
XR_002469225.2 mRNA upstream 32342 48389093 ~ 48424478 (+) False LOC110494013
XR_002469226.2 mRNA upstream 32342 48389093 ~ 48424478 (+) False LOC110494013
XR_005036995.1 mRNA upstream 32342 48389093 ~ 48424478 (+) False LOC110494013
XM_021568671.2 mRNA upstream 102762 48348986 ~ 48354058 (+) False tpgs2
XM_021568678.2 mRNA downstream 37582 48509877 ~ 48515292 (+) True LOC110494016
XM_021568682.2 mRNA downstream 107015 48579310 ~ 48583667 (+) False LOC110494018
XM_036950006.1 mRNA downstream 107034 48579329 ~ 48583667 (+) False LOC110494018
XM_036950007.1 mRNA downstream 107034 48579329 ~ 48583667 (+) True LOC110494018
XM_021568689.2 mRNA downstream 159857 48632152 ~ 48634553 (+) False LOC110494023
TU1667106 other upstream 32415 48389082 ~ 48424405 (+) False LOC110494013
TU1666965 other upstream 420237 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 617450 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 649339 47805358 ~ 47807481 (+) True LOC100135862
TU1666430 other upstream 1228024 47228219 ~ 47228796 (+) True G1456570
TU1668086 other downstream 221026 48693321 ~ 48721244 (+) False bsnb
TU1668190 other downstream 450512 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 456052 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 456052 48928347 ~ 48938022 (+) False erc2
TU1668187 other downstream 456052 48928347 ~ 48935337 (+) False erc2

Expression Profile