RNA id: TU1668127


Basic Information

Item Value
RNA id TU1668127
length 221
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1458072
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48749544 ~ 48749764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgagtcaatgtgtgtggggttacaggttagtcgaggtaatttgtaaagtgactatgcatagataaaaaaacagcaagtagcagcagtgtaaaaaaaaggGGCGGgtaacaatgtaaatagtccaggtggccatttgattaattgttcagcagtcttatggctttggggtagaagctgttaaggagcctttcggcccgagacttggcgctcctgtacCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668033 lncRNA upstream 39528 48621434 ~ 48710016 (+) True G1457988
TU1668017 lncRNA upstream 139965 48608220 ~ 48609579 (+) True G1457973
TU1667249 lncRNA upstream 174321 48574999 ~ 48575223 (+) True G1457311
TU1667105 lncRNA upstream 277249 48456820 ~ 48472295 (+) True G1457188
TU1667104 lncRNA upstream 288656 48456820 ~ 48460888 (+) False G1457188
TU1668138 lncRNA downstream 13862 48763626 ~ 48763825 (+) True G1458083
TU1668088 lncRNA downstream 23293 48773057 ~ 48773274 (+) True G1458033
TU1668148 lncRNA downstream 25701 48775465 ~ 48775684 (+) True G1458093
TU1668085 lncRNA downstream 56148 48805912 ~ 48814670 (+) True bsnb
TU1668170 lncRNA downstream 71533 48821297 ~ 48821524 (+) True G1458115
XM_021568695.2 mRNA upstream 59447 48677007 ~ 48690097 (+) True bap1
XM_021568689.2 mRNA upstream 114991 48632152 ~ 48634553 (+) False LOC110494023
XM_021568690.2 mRNA upstream 114991 48632171 ~ 48634553 (+) True LOC110494023
XM_021568682.2 mRNA upstream 165877 48579310 ~ 48583667 (+) False LOC110494018
XM_036950006.1 mRNA upstream 165877 48579329 ~ 48583667 (+) False LOC110494018
XM_036950016.1 mRNA downstream 116825 48866589 ~ 48938021 (+) False erc2
XM_036950018.1 mRNA downstream 116825 48866589 ~ 48938021 (+) False erc2
XM_036950014.1 mRNA downstream 116826 48866590 ~ 48938021 (+) False erc2
XM_036950015.1 mRNA downstream 116826 48866590 ~ 48938021 (+) False erc2
XM_036950017.1 mRNA downstream 116827 48866591 ~ 48938021 (+) False erc2
TU1668086 other upstream 28300 48693321 ~ 48721244 (+) False bsnb
TU1667106 other upstream 325139 48389082 ~ 48424405 (+) False LOC110494013
TU1666965 other upstream 712961 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 910174 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 942063 47805358 ~ 47807481 (+) True LOC100135862
TU1668190 other downstream 173043 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 178583 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 178583 48928347 ~ 48938022 (+) False erc2
TU1668187 other downstream 178583 48928347 ~ 48935337 (+) False erc2
TU1668189 other downstream 183576 48933340 ~ 49040356 (+) True erc2

Expression Profile