RNA id: TU1668138


Basic Information

Item Value
RNA id TU1668138
length 200
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1458083
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48763626 ~ 48763825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATATGCATGTATGAGTGTGGAGTCTGAATATGCATGTATTGGTGTGGAGTCTGAATATGCATGTAAGGGTATGGATTCTGCATGTATGGGTGTGGTATCTGAGTATACATGTATGGGTGTGGAGTCTGAATATGCATGTATGGGTGTGGAGTCTGAATATGCATGTATGGGTGTGGGGTCTGaatatgcatgtatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668127 lncRNA upstream 13862 48749544 ~ 48749764 (+) True G1458072
TU1668033 lncRNA upstream 53610 48621434 ~ 48710016 (+) True G1457988
TU1668017 lncRNA upstream 154047 48608220 ~ 48609579 (+) True G1457973
TU1667249 lncRNA upstream 188403 48574999 ~ 48575223 (+) True G1457311
TU1667105 lncRNA upstream 291331 48456820 ~ 48472295 (+) True G1457188
TU1668088 lncRNA downstream 9232 48773057 ~ 48773274 (+) True G1458033
TU1668148 lncRNA downstream 11640 48775465 ~ 48775684 (+) True G1458093
TU1668085 lncRNA downstream 42087 48805912 ~ 48814670 (+) True bsnb
TU1668170 lncRNA downstream 57472 48821297 ~ 48821524 (+) True G1458115
TU1668176 lncRNA downstream 65451 48829276 ~ 48829484 (+) True G1458121
XM_021568695.2 mRNA upstream 73529 48677007 ~ 48690097 (+) True bap1
XM_021568689.2 mRNA upstream 129073 48632152 ~ 48634553 (+) False LOC110494023
XM_021568690.2 mRNA upstream 129073 48632171 ~ 48634553 (+) True LOC110494023
XM_036950006.1 mRNA upstream 179959 48579329 ~ 48583667 (+) False LOC110494018
XM_036950016.1 mRNA downstream 102764 48866589 ~ 48938021 (+) False erc2
XM_036950018.1 mRNA downstream 102764 48866589 ~ 48938021 (+) False erc2
XM_036950014.1 mRNA downstream 102765 48866590 ~ 48938021 (+) False erc2
XM_036950015.1 mRNA downstream 102765 48866590 ~ 48938021 (+) False erc2
XM_036950017.1 mRNA downstream 102766 48866591 ~ 48938021 (+) False erc2
TU1668086 other upstream 42382 48693321 ~ 48721244 (+) False bsnb
TU1667106 other upstream 339221 48389082 ~ 48424405 (+) False LOC110494013
TU1666965 other upstream 727043 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 924256 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 956145 47805358 ~ 47807481 (+) True LOC100135862
TU1668190 other downstream 158982 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 164522 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 164522 48928347 ~ 48938022 (+) False erc2
TU1668187 other downstream 164522 48928347 ~ 48935337 (+) False erc2
TU1668189 other downstream 169515 48933340 ~ 49040356 (+) True erc2

Expression Profile