RNA id: TU1668176


Basic Information

Item Value
RNA id TU1668176
length 209
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1458121
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48829276 ~ 48829484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgttgtcccactcctcttcaatggctgtgtgaagttgctggatattggcgggaactggaacaagctgcccgtacacatcaatccagaggatcccaaacatgctcaatgggtgacatgtctggtgaatatgcaggccatggaagaaatgggacattttcagcttccagaaattgtgcacagatccttgtgacatggggccgtgcattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668170 lncRNA upstream 7752 48821297 ~ 48821524 (+) True G1458115
TU1668085 lncRNA upstream 14606 48805912 ~ 48814670 (+) True bsnb
TU1668148 lncRNA upstream 53592 48775465 ~ 48775684 (+) True G1458093
TU1668088 lncRNA upstream 56002 48773057 ~ 48773274 (+) True G1458033
TU1668138 lncRNA upstream 65451 48763626 ~ 48763825 (+) True G1458083
TU1668178 lncRNA downstream 837 48830321 ~ 48830908 (+) True G1458123
TU1668179 lncRNA downstream 3314 48832798 ~ 48833281 (+) True G1458124
TU1668202 lncRNA downstream 17913 48847397 ~ 48847712 (+) True G1458139
TU1668203 lncRNA downstream 18544 48848028 ~ 48848235 (+) True G1458140
TU1668239 lncRNA downstream 116001 48945485 ~ 48950296 (+) True G1458176
XM_036950013.1 mRNA upstream 16053 48693324 ~ 48813223 (+) False bsnb
XM_021568695.2 mRNA upstream 139179 48677007 ~ 48690097 (+) True bap1
XM_021568689.2 mRNA upstream 194723 48632152 ~ 48634553 (+) False LOC110494023
XM_021568690.2 mRNA upstream 194723 48632171 ~ 48634553 (+) True LOC110494023
XM_036950007.1 mRNA upstream 245609 48579329 ~ 48583667 (+) True LOC110494018
XM_036950016.1 mRNA downstream 37105 48866589 ~ 48938021 (+) False erc2
XM_036950018.1 mRNA downstream 37105 48866589 ~ 48938021 (+) False erc2
XM_036950014.1 mRNA downstream 37106 48866590 ~ 48938021 (+) False erc2
XM_036950015.1 mRNA downstream 37106 48866590 ~ 48938021 (+) False erc2
XM_036950017.1 mRNA downstream 37107 48866591 ~ 48938021 (+) False erc2
TU1668086 other upstream 108032 48693321 ~ 48721244 (+) False bsnb
TU1667106 other upstream 404871 48389082 ~ 48424405 (+) False LOC110494013
TU1666965 other upstream 792693 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 989906 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 1021795 47805358 ~ 47807481 (+) True LOC100135862
TU1668190 other downstream 93323 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 98863 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 98863 48928347 ~ 48938022 (+) False erc2
TU1668187 other downstream 98863 48928347 ~ 48935337 (+) False erc2
TU1668189 other downstream 103856 48933340 ~ 49040356 (+) True erc2

Expression Profile