RNA id: TU1668202


Basic Information

Item Value
RNA id TU1668202
length 316
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1458139
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48847397 ~ 48847712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctattactagcctgttcaacctctctttcgtatcgtctgagatccccaaatattggaaagctgccacggtcatccccctcttcaaagcgggagacactctagacccaaactgtatagacctatatctatcctaccctgcctttctaaggtcttcgaacagatcaccgaccatttcgaatcccactgtaccttctccgctatgcaatctggtttccgagctggtcatgggtgcacctcagccacgctccaggtcctaaacgatatcataaccaccattgataaaagacaatactgtgaagtcgtattcattgacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668179 lncRNA upstream 14116 48832798 ~ 48833281 (+) True G1458124
TU1668178 lncRNA upstream 16489 48830321 ~ 48830908 (+) True G1458123
TU1668176 lncRNA upstream 17913 48829276 ~ 48829484 (+) True G1458121
TU1668170 lncRNA upstream 25873 48821297 ~ 48821524 (+) True G1458115
TU1668085 lncRNA upstream 32727 48805912 ~ 48814670 (+) True bsnb
TU1668203 lncRNA downstream 316 48848028 ~ 48848235 (+) True G1458140
TU1668239 lncRNA downstream 97773 48945485 ~ 48950296 (+) True G1458176
TU1668196 lncRNA downstream 125493 48973205 ~ 49003577 (+) True G1458133
TU1668263 lncRNA downstream 130189 48977901 ~ 49011971 (+) True LOC110494028
TU1668312 lncRNA downstream 171675 49019387 ~ 49020680 (+) True G1458226
XM_036950013.1 mRNA upstream 34174 48693324 ~ 48813223 (+) False bsnb
XM_021568695.2 mRNA upstream 157300 48677007 ~ 48690097 (+) True bap1
XM_021568689.2 mRNA upstream 212844 48632152 ~ 48634553 (+) False LOC110494023
XM_021568690.2 mRNA upstream 212844 48632171 ~ 48634553 (+) True LOC110494023
XM_036950007.1 mRNA upstream 263730 48579329 ~ 48583667 (+) True LOC110494018
XM_036950016.1 mRNA downstream 18877 48866589 ~ 48938021 (+) False erc2
XM_036950018.1 mRNA downstream 18877 48866589 ~ 48938021 (+) False erc2
XM_036950014.1 mRNA downstream 18878 48866590 ~ 48938021 (+) False erc2
XM_036950015.1 mRNA downstream 18878 48866590 ~ 48938021 (+) False erc2
XM_036950017.1 mRNA downstream 18879 48866591 ~ 48938021 (+) False erc2
TU1668086 other upstream 126153 48693321 ~ 48721244 (+) False bsnb
TU1667106 other upstream 422992 48389082 ~ 48424405 (+) False LOC110494013
TU1666965 other upstream 810814 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 1008027 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 1039916 47805358 ~ 47807481 (+) True LOC100135862
TU1668190 other downstream 75095 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 80635 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 80635 48928347 ~ 48938022 (+) False erc2
TU1668187 other downstream 80635 48928347 ~ 48935337 (+) False erc2
TU1668189 other downstream 85628 48933340 ~ 49040356 (+) True erc2

Expression Profile