RNA id: TU1668196


Basic Information

Item Value
RNA id TU1668196
length 242
lncRNA type sense_over
GC content 0.52
exon number 2
gene id G1458133
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48973205 ~ 49003577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttacaggtGACTGAAGAGCCATCATGTGAAGAGGGGCAGCTGCAGCTCTTTGAGAGTGACTCTGGGGAGGAGGAGTCGTCCAGCAGACACATAGGTGTTGTGAAGTTAGACTGGGTTGGACAGACTGGGtcccactcagacagacagatatctgAGCTGTCTGGTCTCAGCTCTGTGGTTCTGCTCACACAGCCAAACTCACACAACCACTCTGGTATAGTTGTCCAGATGCTCAGCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668239 lncRNA upstream 22909 48945485 ~ 48950296 (+) True G1458176
TU1668203 lncRNA upstream 124970 48848028 ~ 48848235 (+) True G1458140
TU1668202 lncRNA upstream 125493 48847397 ~ 48847712 (+) True G1458139
TU1668179 lncRNA upstream 139924 48832798 ~ 48833281 (+) True G1458124
TU1668178 lncRNA upstream 142297 48830321 ~ 48830908 (+) True G1458123
TU1668312 lncRNA downstream 15810 49019387 ~ 49020680 (+) True G1458226
TU1668324 lncRNA downstream 64450 49068027 ~ 49083653 (+) True G1458237
TU1668353 lncRNA downstream 138493 49142070 ~ 49142648 (+) True G1458264
TU1668354 lncRNA downstream 142930 49146507 ~ 49168867 (+) True G1458265
TU1668382 lncRNA downstream 178325 49181902 ~ 49183741 (+) True G1458293
XM_036950016.1 mRNA upstream 35184 48866589 ~ 48938021 (+) False erc2
XM_021568700.2 mRNA downstream 6431 49010008 ~ 49028325 (+) False LOC110494028
XM_036950021.1 mRNA downstream 6431 49010008 ~ 49028325 (+) False LOC110494028
XM_036950022.1 mRNA downstream 6431 49010008 ~ 49120417 (+) False LOC110494028
XR_005036997.1 mRNA downstream 30385 49033962 ~ 49035924 (+) True LOC118940474
XM_021568713.2 mRNA downstream 305575 49309152 ~ 49319617 (+) True LOC110494034
TU1668185 other upstream 35183 48928347 ~ 48938022 (+) False erc2
TU1668186 other upstream 35183 48928347 ~ 48938022 (+) False erc2
TU1668187 other upstream 37868 48928347 ~ 48935337 (+) False erc2
TU1668190 other upstream 44943 48922807 ~ 48928262 (+) False erc2
TU1668086 other upstream 251961 48693321 ~ 48721244 (+) False bsnb
TU1668956 other downstream 435429 49439006 ~ 49439329 (+) True G1458807
TU1669722 other downstream 1177588 50181165 ~ 50183696 (+) True LOC110494957
TU1669855 other downstream 1427230 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 1772952 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 1891363 50894940 ~ 50897444 (+) True LOC110494047

Expression Profile