RNA id: TU1668386


Basic Information

Item Value
RNA id TU1668386
length 2242
lncRNA type antisense_over
GC content 0.43
exon number 10
gene id G1458294
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 49184690 ~ 49220831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTCCCAAAAATTATATTTATTCCACAATGAATTTGTCACAGGAGATTTGAGTTGCGTTACTAAGTGAACTCCTAGAAACCTCAGTCTTAATGGTTGTTCTTCTTAATTCTGGAACATAATTATTGTATGTTTAATGTCTATGAGTTGGCGGTGGGAGCAACTACATGGTCAGTTAGAGTTGTGTGACGGTGAAGTCAGCTAGACCCCCCAGTAGGGCAGACTGAAGAGGCATCAACCAGCATGCCACGTTGGGTGCAGAGCGAACACTGAGATCCACAGCAGAGTCCCTACAACGCACACACAATCCACAGCAAGGTTCTTAATGTAATAGCATAAGCAAACTACCAAATACGCATCCTTGATATAGATACACAGTAGTATCACAGACAACATATGAACAGTCAGATCTCTACACAGCCTGTGTCTGATAGACAGTTAAACTTacctgcagtggtgtaaagtgatgaagtaaaaatactttaaagtagtacttaagtcgtttttgggggtatctgtactttactatttataaatgtactatttatatttgactacttttacttcactacattccttaagaaaatattgtactttttactccatacattttccttgacacccaaaaggagtcgttacattttgaatgcttagcaagacaggGAAATAGGCCAAATCACGCCACTTATCAACCGAACTTCCCTcatcatccctattgcctctgatctggcggactcactaaaccgacatgctttgtttgtaagttatgtctgagtgttggagtgtgcccctggctttccatagatgaacaaaaacaagaaaacggtgccatctggttttgattaatataaggaatgtggaTGTATATAAGGATTTATactttcacttttgatacttcagtatatTACTCAAGTAGAtttttatttgagtcattttctattaaaggtatcttttactcaagtatgacagttgggtactttttccaccactactTACCTGGAGACGTCTACTTCTTTGTCCTGTATCTTAAGTTTCATTGTTATTCCCTGGACCTCCTCATAGGCAACAGGTGGAAGAGCTGCCATGATCCCGATAATATTGTCTCCTGTCGGGCGCTGCCTCAGGACGGGCCACAGGAACTTGATTCCATTCCTCCTGTAGAGCATGATGACGACCCGTGTTGATGCTATGGTGACATCCATCTCCTTGTCCCTTAGGATCAGAGACACACGTCCGTTTCGTGGTTGATTTTCAGGCTCCAGGAGAAGTATGTTGTATTCTGCCCATCGTTGAAGGTGATGCCAGTAGTGTCTAACTCAATATGTTGATCGCTTCTGTAATGGATCACAATCTTCTGGTAGCCTGCACTGGGTGATTGTCCAAGCTGACCATTCATAGCCAAATCTTGTTGGGGTCTATTaggagtctgagagagagagccacaggAATGTCATAGCACAGTGGCAGAGCCTGGCCCTCAGCGGGCAACAGGAACCTCCGGAGAGGactcactgagagagagagagagagagagagaggaaaatcgataaagggatagagagagggacagacagagagaatgcaGAAGGGTGCTTAAGATACTTTGTGAGAAAAAACAGCAATAACATTAGACAACATCTtaaatatacaaaaaaatacattttgaggaCGACAAATATTGCAGTACCAGTTGTAGTTGTAGTTCTCCTTGTAGTTTTAGTTGGGTGAGCTCGCAGAGGATCATTAAAATCCTGAAAACCCATGGCAAAGTCAGGAAATGACTGCTGGACAGCATGACCAACATCATAATCAGTACGACTCATCAAGCCACCACTTGACAtgattcctcttcctccccctccccttttgttggcatttcCTCTTAGTCCTTGTTCTGGGAGAGCACCAGCAGGAATGTTTCGGGCTGACAATGCAGGCGATCCGTAGACTTGGTGGTTCAAGAAATGTAATGATGACCCGTAGTCGACTTGACTAGATTGTATCCGTTTCTTCCCCTCCTTGGGCTTGTGGGCCACCTGTGAGTCCTCTCCCTGGGGCTTGGTGACCACCATTGAGGTGAAAGGAGTCACAAAGCCGTACTTCAGACAAAGATCCAGGGCCTCCTTCTTCACCTTCTCCTTTGCCGTCCCGCTCAACTGCACcctgaaacaaacacacacaaacacaggtatAATAACTGTATTTGcattaaaaaaattacaaaatacgattttcaaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668382 lncRNA upstream 949 49181902 ~ 49183741 (+) True G1458293
TU1668354 lncRNA upstream 15823 49146507 ~ 49168867 (+) True G1458265
TU1668353 lncRNA upstream 42042 49142070 ~ 49142648 (+) True G1458264
TU1668324 lncRNA upstream 101037 49068027 ~ 49083653 (+) True G1458237
TU1668312 lncRNA upstream 164010 49019387 ~ 49020680 (+) True G1458226
TU1668385 lncRNA downstream 5712 49199796 ~ 49201963 (+) False G1458294
TU1668389 lncRNA downstream 5712 49199796 ~ 49201963 (+) False G1458294
TU1668391 lncRNA downstream 12443 49206527 ~ 49208687 (+) True G1458294
TU1668399 lncRNA downstream 15866 49209950 ~ 49269648 (+) True G1458301
TU1668872 lncRNA downstream 136651 49330735 ~ 49332979 (+) True G1458725
XM_036950022.1 mRNA upstream 64273 49010008 ~ 49120417 (+) False LOC110494028
XR_005036997.1 mRNA upstream 148766 49033962 ~ 49035924 (+) True LOC118940474
XM_021568700.2 mRNA upstream 156365 49010008 ~ 49028325 (+) False LOC110494028
XM_036950021.1 mRNA upstream 156365 49010008 ~ 49028325 (+) False LOC110494028
XM_036948351.1 mRNA upstream 204123 48977636 ~ 48980567 (+) True LOC118940102
XM_021568713.2 mRNA downstream 115068 49309152 ~ 49319617 (+) True LOC110494034
XM_036948171.1 mRNA downstream 284832 49478916 ~ 49594500 (+) False cacna1da
XM_036948173.1 mRNA downstream 284832 49478916 ~ 49594500 (+) False cacna1da
XM_036948174.1 mRNA downstream 284832 49478916 ~ 49594500 (+) False cacna1da
XM_036948175.1 mRNA downstream 284832 49478916 ~ 49594500 (+) False cacna1da
TU1668189 other upstream 144334 48933340 ~ 49040356 (+) True erc2
TU1668185 other upstream 246668 48928347 ~ 48938022 (+) False erc2
TU1668186 other upstream 246668 48928347 ~ 48938022 (+) False erc2
TU1668187 other upstream 249353 48928347 ~ 48935337 (+) False erc2
TU1668190 other upstream 256428 48922807 ~ 48928262 (+) False erc2
TU1668956 other downstream 244922 49439006 ~ 49439329 (+) True G1458807
TU1669722 other downstream 987081 50181165 ~ 50183696 (+) True LOC110494957
TU1669855 other downstream 1236723 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 1582445 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 1700856 50894940 ~ 50897444 (+) True LOC110494047

Expression Profile