RNA id: TU1668385


Basic Information

Item Value
RNA id TU1668385
length 1950
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1458294
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 49184690 ~ 49220831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtGGAGCTTGGCATTTGACTTATGCTCGTGCAGTTACAAACTTGCTAGAGTTAGCAGCAGGCGGATTAACAATATCCACCGTTGTAATACAAATGAAGCCTGAGCTGGTGTGTGAAGCTAACTGAAACTGGTTGgctttagaaaaccctgagtaAATCTGGCTTGCTTTGTAGGATACCCCTCTTCATAGACACAGGTGCAAACATACCCAAACACAGACAATGTCATGCAAAGCAAACTCACTCTTTGTCCAGGAGCTGCTTTACAGTGAGGTAGGCCCACAGCCTCTGGATGTGGCTGTCAGACCTGGCTTCAATGGGCTCCTTCGTTGGTAATGTGTCAGAGTACATCACCCTATTGCTTTCGATATGGCTATGACTTCTGCGGTAAACATCTCTATGTTGTTGTCGGGGATCTGGCCAGCTACCACGATCTCAGAGCCGTTGTAATACTGGCTGAAGTTGGTTTGGGTCAGGTTAGCCCCACCCAGATATACCATCTGCACGTCCGTCAATAGGGGTGTAGCCACCTCTTCATAAAAGCCCTGTCAATCGTACAGTACAGTAGCCATTAGTCCCACCCCCTTGCTCCTTCTTGTTCCCTCCCAAGTCAACTACCGTCAGATAAACAGAAAACAACCGTTTAAGCCTGCTTAGATGAGATAGGATTTTATTACACTTTATTACACTTTATTCAACTGGCGGTAAGGAGGTGAAAGTGTTAAACATTAGTTTGCAATTTTGTCATGTAAAAACTGTCGCActagtattcaatccctttgttatggcctAAATAAGTCCAGGAGTAAACATcaaagtcacataagttgcatggtaATAAAGGTATGGGAAAAAATAtcggacattatatggtgaagttattaattacactggaTGGTGCCCTGACTCCTGACccccggtgtggcggtaatacagtcaccataaCAGCCCTACCTGTAACTGTGTTTAGACATAGCatatttaaaacaagttgttgtttCGTTTTATTCGAATTTGATTCAAATGATTCACTCTGTCTTTTTAGCTCTTATCAATAATGAATTGAATCTTTCTCATTGACAACGTTTGTCCATGGCTCAGATGTGGTGCATTTTACACTAAGCCATTATCAGTGTGAATGTTAACAATATATTTCCATATATTTCCATATTGAACCCATGTAATTACTGTTCAAAAACAAGTTCAATTTAGCAAATATGCGATAGGtctacatttttgcaaattttgtTTCCGTAGGCTATTTAACAGACTTGCCTATAACGGACTAACAGTCTAGTTAGAGTTCATTACAATACATAAGAGACCGCAAATACGaaacttgaagcaaccacatacAGTATTTAGCCATGGGgcatgttctgattggccagtgagggatCAAGCCTCTACACACCTTCAACTTGTTTATTCATAAAAACCCAGCCTTTTCGTGCCACCGCCAGCTACTGGGCTCATAATTCCGGttgtgaaaatagcaaaaatatttctgacacGCCTCCGAACTTATAGCGCTACCACCAGGACTTAGATTAAAATTgcattaggtttgttaaaataaaGCCTTAAAGGTTGGTTCAGCACTTTTGTATTCTAGCTAACGAAGCTCAGTTGGGAATTTTTTAAAATAGTTTTTGTTACAGGCTCAAATTTTTATGTTGAGATTTGTAAGAAAGAATTACAGTCCATTGCAGTGCCACACACTGTGTGTTACCTTACCTGCAGCTGCAGAGCAGCATCAGAGTCTGTATATATTCTGCGTCCCACACCTCCGTTCTCCAGTGCCATCTTCTCCAGGAAGTCAAAGTTGACATCCATTCCAAAGCCGAGACAGTAAAGAGGGAATTTCTTACCAATAGCCTCCTTTATGTTCTCATGAATCTTTTCCAGGTTGGTCTCACCTGAGGAAAGTGAGATTGgctttcattgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668384 lncRNA upstream 5712 49184690 ~ 49194084 (+) False G1458294
TU1668386 lncRNA upstream 5712 49184690 ~ 49194084 (+) False G1458294
TU1668392 lncRNA upstream 5712 49184690 ~ 49194084 (+) False G1458294
TU1668382 lncRNA upstream 16055 49181902 ~ 49183741 (+) True G1458293
TU1668354 lncRNA upstream 30929 49146507 ~ 49168867 (+) True G1458265
TU1668391 lncRNA downstream 4564 49206527 ~ 49208687 (+) True G1458294
TU1668399 lncRNA downstream 7987 49209950 ~ 49269648 (+) True G1458301
TU1668872 lncRNA downstream 128772 49330735 ~ 49332979 (+) True G1458725
TU1668960 lncRNA downstream 242845 49444808 ~ 49445154 (+) True G1458811
TU1669072 lncRNA downstream 263881 49465844 ~ 49466045 (+) True G1458919
XM_036950022.1 mRNA upstream 79379 49010008 ~ 49120417 (+) False LOC110494028
XR_005036997.1 mRNA upstream 163872 49033962 ~ 49035924 (+) True LOC118940474
XM_021568700.2 mRNA upstream 171471 49010008 ~ 49028325 (+) False LOC110494028
XM_036950021.1 mRNA upstream 171471 49010008 ~ 49028325 (+) False LOC110494028
XM_036948351.1 mRNA upstream 219229 48977636 ~ 48980567 (+) True LOC118940102
XM_021568713.2 mRNA downstream 107189 49309152 ~ 49319617 (+) True LOC110494034
XM_036948171.1 mRNA downstream 276953 49478916 ~ 49594500 (+) False cacna1da
XM_036948173.1 mRNA downstream 276953 49478916 ~ 49594500 (+) False cacna1da
XM_036948174.1 mRNA downstream 276953 49478916 ~ 49594500 (+) False cacna1da
XM_036948175.1 mRNA downstream 276953 49478916 ~ 49594500 (+) False cacna1da
TU1668189 other upstream 159440 48933340 ~ 49040356 (+) True erc2
TU1668185 other upstream 261774 48928347 ~ 48938022 (+) False erc2
TU1668186 other upstream 261774 48928347 ~ 48938022 (+) False erc2
TU1668187 other upstream 264459 48928347 ~ 48935337 (+) False erc2
TU1668190 other upstream 271534 48922807 ~ 48928262 (+) False erc2
TU1668956 other downstream 237043 49439006 ~ 49439329 (+) True G1458807
TU1669722 other downstream 979202 50181165 ~ 50183696 (+) True LOC110494957
TU1669855 other downstream 1228844 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 1574566 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 1692977 50894940 ~ 50897444 (+) True LOC110494047

Expression Profile