RNA id: TU1669072


Basic Information

Item Value
RNA id TU1669072
length 202
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1458919
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 49465844 ~ 49466045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACTATTCACCcttccaaagtcaatactttgtagagacacttTTTGCAGCATTtatagctgcaagtctcttggggtatgtctctataagtttggcacatctagccactgggatttttgctcattcttcaaggcaaaactgctccagctccttcaagttggatgggttccgctggtgtacaacaatctttaagtcataccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668960 lncRNA upstream 20690 49444808 ~ 49445154 (+) True G1458811
TU1668872 lncRNA upstream 132865 49330735 ~ 49332979 (+) True G1458725
TU1668399 lncRNA upstream 196196 49209950 ~ 49269648 (+) True G1458301
TU1668391 lncRNA upstream 257157 49206527 ~ 49208687 (+) True G1458294
TU1668385 lncRNA upstream 263881 49199796 ~ 49201963 (+) False G1458294
TU1669080 lncRNA downstream 3236 49469281 ~ 49469561 (+) True G1458927
TU1669084 lncRNA downstream 4869 49470914 ~ 49471432 (+) True G1458931
TU1669088 lncRNA downstream 9500 49475545 ~ 49475959 (+) True G1458935
TU1669107 lncRNA downstream 12897 49478942 ~ 49488299 (+) True cacna1da
TU1669175 lncRNA downstream 121907 49587952 ~ 49588882 (+) True G1458992
XM_021568713.2 mRNA upstream 146227 49309152 ~ 49319617 (+) True LOC110494034
XM_036950022.1 mRNA upstream 345427 49010008 ~ 49120417 (+) False LOC110494028
XR_005036997.1 mRNA upstream 429920 49033962 ~ 49035924 (+) True LOC118940474
XM_021568700.2 mRNA upstream 437519 49010008 ~ 49028325 (+) False LOC110494028
XM_036948171.1 mRNA downstream 12871 49478916 ~ 49594500 (+) False cacna1da
XM_036948173.1 mRNA downstream 12871 49478916 ~ 49594500 (+) False cacna1da
XM_036948174.1 mRNA downstream 12871 49478916 ~ 49594500 (+) False cacna1da
XM_036948175.1 mRNA downstream 12871 49478916 ~ 49594500 (+) False cacna1da
XM_036948176.1 mRNA downstream 12871 49478916 ~ 49594500 (+) False cacna1da
TU1668956 other upstream 26515 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 425488 48933340 ~ 49040356 (+) True erc2
TU1668185 other upstream 527822 48928347 ~ 48938022 (+) False erc2
TU1669722 other downstream 715120 50181165 ~ 50183696 (+) True LOC110494957
TU1669855 other downstream 964762 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 1310484 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 1428895 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 1614087 51080132 ~ 51090889 (+) False G1460249

Expression Profile