RNA id: TU1669189


Basic Information

Item Value
RNA id TU1669189
length 426
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1458998
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 49664506 ~ 49664931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCATACAGCAAAACAGGGACAGAACATAGGACATGACAATAATACATGCTGCTTACGGAGttactgttcatataaggaaatcagtcatctgaaataaattcattaagccataatctatggattttacatgactgggaatacagctatgcatatgttggtcacagacaccttaaaaaaaggtaggggcatggatcagaaaacctgtcACTATGTGGTGCAACCACCATTTCCCTcgtgcagcgtgacacatctccttcacatagagttgatcaggctgttgattgtggcctgtggaatgttgacccactcctcttcaatggctgtgcgaagttgctggatattggccggaactggaacacgctgttgtacaagttgatccagagcatcccaaacgtgctcagtgggtgacatgtctggtaagcATG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669175 lncRNA upstream 75624 49587952 ~ 49588882 (+) True G1458992
TU1669107 lncRNA upstream 176207 49478942 ~ 49488299 (+) True cacna1da
TU1669088 lncRNA upstream 188547 49475545 ~ 49475959 (+) True G1458935
TU1669084 lncRNA upstream 193074 49470914 ~ 49471432 (+) True G1458931
TU1669080 lncRNA upstream 194945 49469281 ~ 49469561 (+) True G1458927
TU1669188 lncRNA downstream 1567 49666498 ~ 49667783 (+) True G1458997
TU1669219 lncRNA downstream 4280 49669211 ~ 49669661 (+) False G1459027
TU1669222 lncRNA downstream 4280 49669211 ~ 49669740 (+) True G1459027
TU1669225 lncRNA downstream 7190 49672121 ~ 49672345 (+) True G1459030
TU1669253 lncRNA downstream 42979 49707910 ~ 49773572 (+) True G1459052
XM_021570293.2 mRNA upstream 6539 49604663 ~ 49657967 (+) True LOC110494954
XM_036948171.1 mRNA upstream 70006 49478916 ~ 49594500 (+) False cacna1da
XM_036948173.1 mRNA upstream 70006 49478916 ~ 49594500 (+) False cacna1da
XM_036948174.1 mRNA upstream 70006 49478916 ~ 49594500 (+) False cacna1da
XM_036948175.1 mRNA upstream 70006 49478916 ~ 49594500 (+) False cacna1da
XM_036948186.1 mRNA downstream 516114 50181045 ~ 50192699 (+) False LOC110494957
XM_021570299.2 mRNA downstream 516119 50181050 ~ 50192699 (+) False LOC110494957
XM_021570327.2 mRNA downstream 532172 50197103 ~ 50207320 (+) True LOC110494976
XM_021570338.2 mRNA downstream 557710 50222641 ~ 50229675 (+) True LOC110494984
XM_036947899.1 mRNA downstream 568716 50233647 ~ 50239667 (+) False rhoa
TU1668956 other upstream 225177 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 624150 48933340 ~ 49040356 (+) True erc2
TU1668185 other upstream 726484 48928347 ~ 48938022 (+) False erc2
TU1669722 other downstream 516234 50181165 ~ 50183696 (+) True LOC110494957
TU1669855 other downstream 765876 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 1111598 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 1230009 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 1415201 51080132 ~ 51090889 (+) False G1460249

Expression Profile