RNA id: TU1669225


Basic Information

Item Value
RNA id TU1669225
length 225
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1459030
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 49672121 ~ 49672345 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCATCTCTGAACCAATCACTTCGTTTAGCTAAATTTAAAAGATGTACCATGGGCCTACTTACCGAATTGGGTGTTATTTGGACCTTTCCTGAGAATACACCTTTCAAAGTTTTGAAAAGATTTCCAAGATGGAGGACAATCTACCATGTCATTGAGGCAAATATGTTCAGCCTGAGGACAGACACCTACATACAAAGTTTCAAGTATCTAGGTCAGGGGTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669222 lncRNA upstream 2381 49669211 ~ 49669740 (+) True G1459027
TU1669219 lncRNA upstream 2460 49669211 ~ 49669661 (+) False G1459027
TU1669188 lncRNA upstream 4338 49666498 ~ 49667783 (+) True G1458997
TU1669189 lncRNA upstream 7190 49664506 ~ 49664931 (+) True G1458998
TU1669175 lncRNA upstream 83239 49587952 ~ 49588882 (+) True G1458992
TU1669253 lncRNA downstream 35565 49707910 ~ 49773572 (+) True G1459052
TU1669279 lncRNA downstream 84163 49756508 ~ 49763510 (+) True G1459076
TU1669298 lncRNA downstream 111240 49783585 ~ 49815087 (+) True G1459092
TU1669314 lncRNA downstream 160667 49833012 ~ 50010633 (+) False G1459107
TU1669316 lncRNA downstream 160667 49833012 ~ 50010633 (+) True G1459107
XM_021570293.2 mRNA upstream 14154 49604663 ~ 49657967 (+) True LOC110494954
XM_036948173.1 mRNA upstream 77621 49478916 ~ 49594500 (+) False cacna1da
XM_036948186.1 mRNA downstream 508700 50181045 ~ 50192699 (+) False LOC110494957
XM_021570299.2 mRNA downstream 508705 50181050 ~ 50192699 (+) False LOC110494957
XM_021570327.2 mRNA downstream 524758 50197103 ~ 50207320 (+) True LOC110494976
XM_021570338.2 mRNA downstream 550296 50222641 ~ 50229675 (+) True LOC110494984
XM_036947899.1 mRNA downstream 561302 50233647 ~ 50239667 (+) False rhoa
TU1668956 other upstream 232792 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 631765 48933340 ~ 49040356 (+) True erc2
TU1668185 other upstream 734099 48928347 ~ 48938022 (+) False erc2
TU1669722 other downstream 508820 50181165 ~ 50183696 (+) True LOC110494957
TU1669855 other downstream 758462 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 1104184 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 1222595 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 1407787 51080132 ~ 51090889 (+) False G1460249

Expression Profile