RNA id: TU1669314



Basic Information


Item Value
RNA id TU1669314
length 253
lncRNA type read_through
GC content 0.30
exon number 3
gene id G1459107
representative False

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 49833012 ~ 50010633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acctgctagatctactgtctcatttatattatgacatttcagctagatctactgtctctattatattatgacatttcagctagatctactgtctcttttatattatgacatttcagctagatctactgtctctattatattatgacatttcagctagatctactgtctcttttatattatgacatttcagctagatctactgtctctattatattatgacatttcagctagatctactgtctctattatatta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1669298 lncRNA upstream 17925 49783585 ~ 49815087 (+) True G1459092
TU1669253 lncRNA upstream 59440 49707910 ~ 49773572 (+) True G1459052
TU1669279 lncRNA upstream 69502 49756508 ~ 49763510 (+) True G1459076
TU1669225 lncRNA upstream 160667 49672121 ~ 49672345 (+) True G1459030
TU1669222 lncRNA upstream 163272 49669211 ~ 49669740 (+) True G1459027
TU1669356 lncRNA downstream 19857 50030490 ~ 50030987 (+) True G1459146
TU1669372 lncRNA downstream 102342 50112975 ~ 50121017 (+) True G1459162
TU1669669 lncRNA downstream 118412 50129045 ~ 50129263 (+) True G1459431
TU1669711 lncRNA downstream 147440 50158073 ~ 50158290 (+) True G1459463
TU1669716 lncRNA downstream 152415 50163048 ~ 50163382 (+) True G1459468
XM_021570293.2 mRNA upstream 175045 49604663 ~ 49657967 (+) True LOC110494954
XM_036948173.1 mRNA upstream 238512 49478916 ~ 49594500 (+) False cacna1da
XM_036948186.1 mRNA downstream 170412 50181045 ~ 50192699 (+) False LOC110494957
XM_021570299.2 mRNA downstream 170417 50181050 ~ 50192699 (+) False LOC110494957
XM_021570327.2 mRNA downstream 186470 50197103 ~ 50207320 (+) True LOC110494976
XM_021570338.2 mRNA downstream 212008 50222641 ~ 50229675 (+) True LOC110494984
XM_036947899.1 mRNA downstream 223014 50233647 ~ 50239667 (+) False rhoa
TU1668956 other upstream 393683 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 792656 48933340 ~ 49040356 (+) True erc2
TU1668185 other upstream 894990 48928347 ~ 48938022 (+) False erc2
TU1669722 other downstream 170532 50181165 ~ 50183696 (+) True LOC110494957
TU1669855 other downstream 420174 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 765896 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 884307 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 1069499 51080132 ~ 51090889 (+) False G1460249

Expression Profile