RNA id: TU1669328



Basic Information


Item Value
RNA id TU1669328
length 306
lncRNA type read_through
GC content 0.41
exon number 2
gene id G1459119
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 49947271 ~ 50119366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACTCCAGAAGCCACACCCACTGCTGCCTGCCATAATTGCCCCACTATTTGGTGACATGATGACATCGGGAGAGGTCATTAGCTCTTGTTCTTCTAAGAAAATGTGCACAGCTCTGTTTTCATGTGAGAAAAGACAGCTAGAAAAGGATACTTACACAGAATGCTTTCTTGACTGTTTGATTCCACTTCACTTTCTGTGGAGCTTTGACCTCCTGGTCACATGCAAGAGAGAAGGACAACTTAATAACAAAGCTatgtaaatatttctaagaagAGACAAATTGTTTGATTAATCCTACTACATTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1669298 lncRNA upstream 132184 49783585 ~ 49815087 (+) True G1459092
TU1669253 lncRNA upstream 173699 49707910 ~ 49773572 (+) True G1459052
TU1669279 lncRNA upstream 183761 49756508 ~ 49763510 (+) True G1459076
TU1669225 lncRNA upstream 274926 49672121 ~ 49672345 (+) True G1459030
TU1669222 lncRNA upstream 277531 49669211 ~ 49669740 (+) True G1459027
TU1669669 lncRNA downstream 9679 50129045 ~ 50129263 (+) True G1459431
TU1669711 lncRNA downstream 38707 50158073 ~ 50158290 (+) True G1459463
TU1669716 lncRNA downstream 43682 50163048 ~ 50163382 (+) True G1459468
TU1669726 lncRNA downstream 53626 50172992 ~ 50173200 (+) True G1459476
TU1669728 lncRNA downstream 55211 50174577 ~ 50174823 (+) True G1459478
XM_021570293.2 mRNA upstream 289304 49604663 ~ 49657967 (+) True LOC110494954
XM_036948173.1 mRNA upstream 352771 49478916 ~ 49594500 (+) False cacna1da
XM_036948186.1 mRNA downstream 61679 50181045 ~ 50192699 (+) False LOC110494957
XM_021570299.2 mRNA downstream 61684 50181050 ~ 50192699 (+) False LOC110494957
XM_021570327.2 mRNA downstream 77737 50197103 ~ 50207320 (+) True LOC110494976
XM_021570338.2 mRNA downstream 103275 50222641 ~ 50229675 (+) True LOC110494984
XM_036947899.1 mRNA downstream 114281 50233647 ~ 50239667 (+) False rhoa
TU1668956 other upstream 507942 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 906915 48933340 ~ 49040356 (+) True erc2
TU1668185 other upstream 1009249 48928347 ~ 48938022 (+) False erc2
TU1669722 other downstream 61799 50181165 ~ 50183696 (+) True LOC110494957
TU1669855 other downstream 311441 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 657163 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 775574 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 960766 51080132 ~ 51090889 (+) False G1460249

Expression Profile