RNA id: TU1669669



Basic Information


Item Value
RNA id TU1669669
length 219
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1459431
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50129045 ~ 50129263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGTAATGATGAGGCCACCATATGCTACTACTCACGGTGATGGCCAATGCGCTCCTCTTGGCAATAGCCCATCTCAGGATGAGCTACTTTGAAAAAAATAGTGCTGCTAGTCACAAAAAAATCGGAGTTGAGAATGATATTGGTTCTACAGACTGTCTTCTATTTTCAGCAGTagacatttgctttccaaactatgTTTTTCTCACAATTTGTATTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1669333 lncRNA upstream 7479 49957966 ~ 50121566 (+) True G1459124
TU1669372 lncRNA upstream 8028 50112975 ~ 50121017 (+) True G1459162
TU1669328 lncRNA upstream 9679 49947271 ~ 50119366 (+) True G1459119
TU1669342 lncRNA upstream 97025 49991700 ~ 50032020 (+) True G1459132
TU1669356 lncRNA upstream 98058 50030490 ~ 50030987 (+) True G1459146
TU1669711 lncRNA downstream 28810 50158073 ~ 50158290 (+) True G1459463
TU1669716 lncRNA downstream 33785 50163048 ~ 50163382 (+) True G1459468
TU1669726 lncRNA downstream 43729 50172992 ~ 50173200 (+) True G1459476
TU1669728 lncRNA downstream 45314 50174577 ~ 50174823 (+) True G1459478
TU1669730 lncRNA downstream 47429 50176692 ~ 50176955 (+) True G1459480
XM_021570293.2 mRNA upstream 471078 49604663 ~ 49657967 (+) True LOC110494954
XM_036948173.1 mRNA upstream 534545 49478916 ~ 49594500 (+) False cacna1da
XM_036948186.1 mRNA downstream 51782 50181045 ~ 50192699 (+) False LOC110494957
XM_021570299.2 mRNA downstream 51787 50181050 ~ 50192699 (+) False LOC110494957
XM_021570327.2 mRNA downstream 67840 50197103 ~ 50207320 (+) True LOC110494976
XM_021570338.2 mRNA downstream 93378 50222641 ~ 50229675 (+) True LOC110494984
XM_036947899.1 mRNA downstream 104384 50233647 ~ 50239667 (+) False rhoa
TU1668956 other upstream 689716 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1088689 48933340 ~ 49040356 (+) True erc2
TU1668185 other upstream 1191023 48928347 ~ 48938022 (+) False erc2
TU1669722 other downstream 51902 50181165 ~ 50183696 (+) True LOC110494957
TU1669855 other downstream 301544 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 647266 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 765677 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 950869 51080132 ~ 51090889 (+) False G1460249

Expression Profile