RNA id: TU1669742


Basic Information

Item Value
RNA id TU1669742
length 232
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1459492
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50213231 ~ 50213462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctaaaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggtcgaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669740 lncRNA upstream 2241 50210735 ~ 50210990 (+) True G1459490
TU1669730 lncRNA upstream 36276 50176692 ~ 50176955 (+) True G1459480
TU1669728 lncRNA upstream 38408 50174577 ~ 50174823 (+) True G1459478
TU1669726 lncRNA upstream 40031 50172992 ~ 50173200 (+) True G1459476
TU1669716 lncRNA upstream 49849 50163048 ~ 50163382 (+) True G1459468
TU1669743 lncRNA downstream 291 50213753 ~ 50213953 (+) True G1459493
TU1669744 lncRNA downstream 574 50214036 ~ 50214411 (+) True G1459494
TU1669769 lncRNA downstream 84001 50297463 ~ 50358790 (+) True G1459518
TU1669761 lncRNA downstream 90669 50304131 ~ 50310362 (+) True G1459510
TU1669818 lncRNA downstream 155587 50369049 ~ 50369289 (+) True G1459562
XM_021570327.2 mRNA upstream 5911 50197103 ~ 50207320 (+) True LOC110494976
XM_036948186.1 mRNA upstream 20532 50181045 ~ 50192699 (+) False LOC110494957
XM_021570299.2 mRNA upstream 20532 50181050 ~ 50192699 (+) False LOC110494957
XM_021570293.2 mRNA upstream 555264 49604663 ~ 49657967 (+) True LOC110494954
XM_036948176.1 mRNA upstream 618731 49478916 ~ 49594500 (+) False cacna1da
XM_021570338.2 mRNA downstream 9179 50222641 ~ 50229675 (+) True LOC110494984
XM_036947899.1 mRNA downstream 20185 50233647 ~ 50239667 (+) False rhoa
NM_001165060.1 mRNA downstream 20204 50233666 ~ 50239593 (+) True rhoa
XM_021570312.2 mRNA downstream 39345 50252807 ~ 50259008 (+) True zgc:112334
XM_036948192.1 mRNA downstream 49885 50263347 ~ 50280709 (+) False LOC110494960
TU1669722 other upstream 29535 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 773902 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1172875 48933340 ~ 49040356 (+) True erc2
TU1668186 other upstream 1275209 48928347 ~ 48938022 (+) False erc2
TU1669855 other downstream 217345 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 563067 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 681478 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 866670 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3960552 54174014 ~ 54189617 (+) True G1464092

Expression Profile