RNA id: TU1669769


Basic Information

Item Value
RNA id TU1669769
length 2332
lncRNA type read_through
GC content 0.44
exon number 3
gene id G1459518
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50297463 ~ 50358790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttggaggtgtacctgtggacgtatttcaaggcctaccttcaaactcattaactctttgcttgacatcatgggtaaatcaaaagaaatcagccaagacctcagaaaacacaTTGTacacctccataagtctggttcatccttgggagcaatttccaaacgcctgaaggtaccacgttcatctgtacaaacaatagtatgcaagtataaacaccatgggaccacgcagccgtcataccgctcaggaaggagacgcgttttgtttcctagagatgaacgcactttggtacgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtccaaattgacataatctgaaaggccgctcagcaaggaagaagccactgctcaaaaaccgccataaaaaagccagactacggtttgcaactgcacatggagaaatgtcctctggtttgatgaaacaaaaataggccataaattggccataatgaccatcgttatgtttagaggaaaatggggaggcttgcaagctgaaggacaccatcccaaccgtgaagcacgggggtggcagcatcatcttgtgggggtgctttactgcaggagggactagtgcacttcacaaaatagatggcatcatgaggtaggaaaattatgtggatatattgaagcaatatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccacagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcacacctatagaacatttgtgggcagaactgaaatgcttgtgcgagcaaggaggcctacaaacctgactcagttacaccagctctgtcaggaggaataggacAAAAtttacccaatttattgtgggaagcttgtggaaggctacccgaaacatttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaccttctgacccactgggaatgtgatgaaagaaatgaaagctgaaataaataattctctctactattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaagacagggaatttttactaggataaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttctgacttcaactgtaccttagGTCTACACATTGACTTTGAACTTTATTGTAAGGGTGTGAACAGTTTGCCTGATGACCAAAACTGAATTATTCTGCTGGTCTTTGTTCACTTCATATTgtacttcagtctgagactgccatcgtTGAAGTCGTTTTTAGCGACATCAAAACAAAGTCAGCTTGGATCATCTCAAACCAAGTATCAAAGAGAATGAAGAATTTTTAAGAAGACACTTTATCCACAAgggttctggctctggcccaacccatcggtttctgggacaAATCAATACGGTTAGAATGCATTTGCGTTCTAGAAATCATCAGGGAGGtgctcagatccagactcatagCGGCGAAGAAACTAACGTCCATGGGCGTGGCGTAGCGTTTGGCCGGAAGCAAGGTGTTTGGCCGGAAGCAAGGTGTTTGGCCGGAAGCAAGGTGTTTGGCCGGAAGCAAGGtgtttgggtagccaggcaaatGAACAGTGCCATGAAAAAAGTGAACAGTGCCATGACAAATTGAAAAAATGTATCTCTTAGATCAAAAGGGCCACACTACATCCCTTAACAGGGTTTTAAAAATAAATCCCTGTGCTTGTCTTTATCTTGATGATTACAGTATCAGTCACAAaggttgtgtgtttttgtttcgtTGACACCACTCCACGCCTCTGTTTGCATGTTACTGACTGGCTGGTGGTTGTGAAACGTGTCACTAGGGTTCACACGGATATGGTTAGTTATGCTGGGGGTTGGCTGAGgaagtaggggggagagagagagggatgtgagccAAAATGATAGAGGAGTGGGATTGGAAACAAAGTGACATACTTACACAACATGAAGGACTGGTGTAGAGCCCGAACAACTAGAGAACACTGGGTCCAACTGTTTCACGCACAGCGCACACACTCCTCACCTGATGGTTGTGCTGGTGACCCACTGCGATGGCCTCGACTGTCTGGGCCTGCAGATGTGTCTTCACCTGTGGAGGAAACATAAGACACTTGCTTCAATGTATTTTATACCAGAGGCGGCtgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669744 lncRNA upstream 83052 50214036 ~ 50214411 (+) True G1459494
TU1669743 lncRNA upstream 83510 50213753 ~ 50213953 (+) True G1459493
TU1669742 lncRNA upstream 84001 50213231 ~ 50213462 (+) True G1459492
TU1669740 lncRNA upstream 86473 50210735 ~ 50210990 (+) True G1459490
TU1669730 lncRNA upstream 120508 50176692 ~ 50176955 (+) True G1459480
TU1669818 lncRNA downstream 10259 50369049 ~ 50369289 (+) True G1459562
TU1669824 lncRNA downstream 21984 50380774 ~ 50381005 (+) True G1459568
TU1669833 lncRNA downstream 32477 50391267 ~ 50391700 (+) True G1459570
TU1669842 lncRNA downstream 45586 50404376 ~ 50404630 (+) True G1459575
TU1669849 lncRNA downstream 65025 50423815 ~ 50424018 (+) True G1459582
XM_021570329.2 mRNA upstream 7914 50283097 ~ 50289549 (+) True slc25a20
XM_036948192.1 mRNA upstream 16754 50263347 ~ 50280709 (+) False LOC110494960
XM_036948191.1 mRNA upstream 16754 50263348 ~ 50280709 (+) False LOC110494960
XM_036948193.1 mRNA upstream 16754 50263354 ~ 50280709 (+) True LOC110494960
XM_021570312.2 mRNA upstream 38455 50252807 ~ 50259008 (+) True zgc:112334
XM_021570341.2 mRNA downstream 23282 50382072 ~ 50386942 (+) True LOC110494986
XM_021570316.2 mRNA downstream 41557 50400347 ~ 50402864 (+) False LOC110494971
XM_021570317.2 mRNA downstream 41557 50400347 ~ 50402864 (+) False LOC110494971
XM_036948214.1 mRNA downstream 41557 50400347 ~ 50402864 (+) True LOC110494971
XM_021570334.2 mRNA downstream 49886 50408676 ~ 50422865 (+) True sypl2a
TU1669722 other upstream 113767 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 858134 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1257107 48933340 ~ 49040356 (+) True erc2
TU1668186 other upstream 1359441 48928347 ~ 48938022 (+) False erc2
TU1669855 other downstream 72017 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 417739 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 536150 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 721342 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3815224 54174014 ~ 54189617 (+) True G1464092

Expression Profile