RNA id: TU1669842


Basic Information

Item Value
RNA id TU1669842
length 255
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1459575
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50404376 ~ 50404630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagagattgagctaaaactgtccagtttgagtgtttgttgcagctcgttccagttgctagctgtAGCGTACTGAAAAGGGGAGCGAACCAGGGATGTGTGCgttggcagaatgggtgttgtatgcaGTGTCTCGCGCAAGTTCACTAAAGTAGAGGTTTTTGATGACTAGGCTGAGCTATTCTTCATGCAACAGACCTTAGACCAAACACACACTAgggtttttacatttttaatagcTAAGATAGAGGAtcggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669833 lncRNA upstream 12676 50391267 ~ 50391700 (+) True G1459570
TU1669824 lncRNA upstream 23371 50380774 ~ 50381005 (+) True G1459568
TU1669818 lncRNA upstream 35087 50369049 ~ 50369289 (+) True G1459562
TU1669769 lncRNA upstream 45586 50297463 ~ 50358790 (+) True G1459518
TU1669761 lncRNA upstream 94014 50304131 ~ 50310362 (+) True G1459510
TU1669849 lncRNA downstream 19185 50423815 ~ 50424018 (+) True G1459582
TU1669850 lncRNA downstream 19755 50424385 ~ 50424786 (+) True G1459583
TU1669853 lncRNA downstream 31189 50435819 ~ 50437567 (+) True atxn7l2a
TU1669887 lncRNA downstream 48150 50452780 ~ 50453450 (+) True G1459618
TU1669888 lncRNA downstream 48853 50453483 ~ 50453775 (+) True G1459619
XM_021570316.2 mRNA upstream 1512 50400347 ~ 50402864 (+) False LOC110494971
XM_021570317.2 mRNA upstream 1512 50400347 ~ 50402864 (+) False LOC110494971
XM_036948214.1 mRNA upstream 1512 50400347 ~ 50402864 (+) True LOC110494971
XM_021570341.2 mRNA upstream 17434 50382072 ~ 50386942 (+) True LOC110494986
XM_021570324.2 mRNA upstream 102558 50290278 ~ 50301818 (+) True prkar2ab
XM_021570334.2 mRNA downstream 4046 50408676 ~ 50422865 (+) True sypl2a
XM_036948187.1 mRNA downstream 22515 50427145 ~ 50437612 (+) False atxn7l2a
XM_036948188.1 mRNA downstream 22537 50427167 ~ 50437612 (+) False atxn7l2a
XM_036948189.1 mRNA downstream 22537 50427167 ~ 50437612 (+) False atxn7l2a
XM_036948190.1 mRNA downstream 22544 50427174 ~ 50437612 (+) False atxn7l2a
TU1669722 other upstream 220680 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 965047 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1364020 48933340 ~ 49040356 (+) True erc2
TU1668186 other upstream 1466354 48928347 ~ 48938022 (+) False erc2
TU1669855 other downstream 26177 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 371899 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 490310 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 675502 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3769384 54174014 ~ 54189617 (+) True G1464092

Expression Profile