RNA id: TU1669861


Basic Information

Item Value
RNA id TU1669861
length 1163
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1459592
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50502966 ~ 50504128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catcatttctcagaacaagaatagactgatgagtttcagaagaaacttctttgtttctggccattttgatcctgtaatcaaacccacaaatgctgatgctccagatactcaactagtctaaagaaggccagttttaattgcttctttaatcaggacaacagttttcagctgtgctaccataattgcaaaagggttttctaatgataaattagccttttaaaattataaacttggattagctaacacaacttggaacacaggcgtgatggttgctgataatgaatctctgtacgcctatgtcgatattccattacaaatctgtcgtttccagcgacaatagtcatttacaacattaacaatgtctacactgtatttctgatcaatttgatgttattttaatgtacaaaaaaacgtgcttttctttcaaaagcaaggacatttctaagtcacCCCAAaccttttgaactgtagtgtatattatacTGTTCCCCCACCTCTGTCTTTTGAATGATTTTGAGAGGTGCTATCGAGGCTTCGTAAGGGTGACACAAGCTTGACTAAATGCTGTTTCTCTACTCTGAGTTGCCAAGCGACAATTGAAGGTATGCTTCCCCAAccactcaacctctctctctctctctctctctctctcttgctctttctcagAGACTTAACGCATGTGGATATATATCTGTGACTTTCCTCACGAGGTCATGGACTGAGCTGAAAGGGATGATAATGAATAATGAATCAAGTGCATTAGTATACCTTTCTACACTAGGGCTTCTGCCTAACTTTCAGACATGATACCAACAACATGTGTTGTCAACATCACAAATAAGAAGACATGGGTCTCTGGTTCTGTCTCATTGACCAAAATGATTTGTGTCCCTAGAACTACTATTGTGTAAATACATTATTTCTCATATGTTTcagatgttgtttttttaaacttatGGTTTGTGTTTATTCAGAAGGCTAAATAGATGTTCTACCACTGCCTTTGTTCTGTTGACACATCCTCCATATTCAAAAgcaaagtgtgtgtttgtttgtctgaaGTGTCATCATCAGACATGGGTTCAAAATGTGTATTTGAGTAGCTGGTATTTGAAATCCTTTTTAATATTTTAAAATAATTAATACAGCCCAAAACAAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669909 lncRNA upstream 6599 50495998 ~ 50496367 (+) True G1459640
TU1669865 lncRNA upstream 11771 50483057 ~ 50491195 (+) True ldlrad2
TU1669871 lncRNA upstream 40016 50462471 ~ 50462950 (+) True G1459602
TU1669891 lncRNA upstream 46507 50456201 ~ 50456459 (+) True G1459622
TU1669889 lncRNA upstream 48382 50454092 ~ 50454584 (+) True G1459620
TU1669869 lncRNA downstream 138 50504266 ~ 50504512 (+) True G1459600
TU1669927 lncRNA downstream 39726 50543854 ~ 50544820 (+) True G1459656
TU1669949 lncRNA downstream 65122 50569250 ~ 50573859 (+) True G1459673
TU1669955 lncRNA downstream 71728 50575856 ~ 50576144 (+) True G1459679
TU1669940 lncRNA downstream 73889 50578017 ~ 50578669 (+) True G1459666
XM_021570323.2 mRNA upstream 2880 50488724 ~ 50500086 (+) False ldlrad2
XM_021570335.2 mRNA upstream 57318 50438670 ~ 50445648 (+) True LOC110494981
XM_036948187.1 mRNA upstream 65354 50427145 ~ 50437612 (+) False atxn7l2a
XM_036948179.1 mRNA downstream 6291 50510419 ~ 50543166 (+) False LOC110494989
XM_036948180.1 mRNA downstream 6291 50510419 ~ 50543166 (+) False LOC110494989
XM_036948181.1 mRNA downstream 13259 50517387 ~ 50543166 (+) True LOC110494989
XM_021570336.2 mRNA downstream 153913 50658041 ~ 50664680 (+) True LOC110494982
XM_036948177.1 mRNA downstream 161050 50665178 ~ 50697862 (+) False LOC110494953
TU1669855 other upstream 67260 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 319270 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 1063637 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1462610 48933340 ~ 49040356 (+) True erc2
TU1668187 other upstream 1567629 48928347 ~ 48935337 (+) False erc2
TU1670065 other downstream 272401 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 390812 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 576004 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3669886 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 3752253 54256381 ~ 54264616 (+) True LOC110494100

Expression Profile