RNA id: TU1670551


Basic Information

Item Value
RNA id TU1670551
length 2693
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1460171
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50946778 ~ 50950543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cattccaGAACCAGGAGGACAACAACATGAGGCCTCAATTTACTggatgagccccccccccccccccccccccccccctcctcctctcccctgcaggACCACAACTCCAAGACCAACCGTACccctccttctcatctcctctccccctcctttccctccGCTCCTCCCTTCTCTCATCGCTCTGGTTCCATTTCTAGTCCCTTCGTTTCACTCCTACCCTCTTGGTATACacagatctgagaggattggataggTGTGAGCAATATGTCCGAATATGGAGCCATCACCACAATGCTTCTAAATGTCCAATTTTCTCGGATCTGCGTACATGGAATGAGTAGAGGCTAAGAGAAGGGGCTGTCCTGTCATCTTCAGCTCACcttccttttcttttttttctttagcTATCTAAGATCCCTACATTTTACTCTTTAAAAACACCCGCCCCCCCCCTACGTGATTCTGTTCTTGTAAAGAGTGTGAAAAATTATGATTTGCACTGTTTGAATTGTTTTGGTATGCATTTTTTTACACCGTGTACTTCAGGCTGGATAATGTTGACTCTTGACAGTCACCCACTGAGTAGTTATTGTTTGCATTGActgttgtttattttgtatatatatatatatatatatatatatatatatatatatatactatacttGTACAGTGTGGGTCTGATTGGATGAGATTTGGGTCAATGAGGTAATATATTTTCACTTGCTCAAATGATTCATGTTAGCCTGTCATTCAAAGTTAAAACtactcacacagacactcactcatTCTGTCAACTAACCTGTAGCTTCACAGCTGTTCCCATAGCGACATGGTGGCCATTTTGGCTCTTAACCTGATCAGGTGATCAGCTCTGACCAATTATTTGTTGAGATTTATTGGATACAGTCATTTCTCCTTTCTCTTGCATGTTTAACCTAACTGAAAGGAAAAGCATTCCACTACAATCTGAAGGATTTAATACACAGGCCAGCTCACAAGTTAGCAAaactgagatatatatatatatatatatatgacattacAGGAAATTGTTCCATGTTGATGCAACATAAATCAATAAAGTTTCACGCAGGTTCGATATCCTTGACAATAAGTAAACCAATGTGACGGTCTTAAGCAAACATGTacaccttagtgctgcttttcaAACCGCTTGTCTCATATCACAGTCAACGTCTGTTCCAATTCCAAATGCAAAACAATGTAATATAAGATTTGATATCGTGTTATTTGGGCTAGATTTGGACCCTGCTTTGAGTTGTACATATTCTCACCAATATCAGTTTGCAACATTTTACTTGAACCCTCCTTTTAAAAATCCTACGTGACACTGTCTCGTATAACATGTTTATAAGGCCAAATTTGACTCTTAGTGTTTAGGTTTTCTCTTCATGTCTTAACTTTTGAACATAACCACCAACAAAAAAAAGATGCAATACAACAATTCAATACTAAAATCAGCAGTATGCTCTTTAAAAACATCTCATAGAGCACAGAAAGGATGTAACGCACACAATATCCAACTTGTATATTTTTTCTCCGATTATTCACTCCCCTGAATATGAATCTAGCCATTGCCTCCACTAACAGTTCCTCCCTGTTGGATGTGGAGGTTTCAGCTCAGCTTTTAGTTTAGTGCCATGTACTGTACTTTAGCTATAGGGTGCATACTAGTAGTCTACTGTTGcttccccccccccttttcccctTTCCTACATTCACACAGATATGAAAGAACTAGACTGGTTAAAAGAGGCATCCATCCACCATATTGCTTTCACACGTCCTCTCTGTCCAGATCATTTCAGGTTGAGCCGTGGAGTTGAGCCGAGGAAGTCCATTTTAGAGTATTGAGATGCATCCCTGGTCCCGTTCTTCACTTCAACGCCACTCTATAGGCTTAATACCTGTTTAAGGTTGCTAGTCGTTATTTGAAGTTGGACGTTTGCACCTGACAGAATGTACCATTGGTGAATTGGCTTGTTTAACACAAAGTAAAAATGGTATTGTCTCTAAAATGAAGTGAAAGGTGTAATTTGTTCCACGATGCACCTGGCTACAGTGACTGACAGTGATGTGTTATTGGTTAACAGTAACGGTACCTCTTCGTCTTGGTTTCTCTGCCTGAGAATAGGAGTCTCTCACCTTATGCTGAACAGGCCTGGTTGTGTTGGGTTTTATGTGTGTGGGTTCAAGGGAAGtcgggtgccagtctgtttctgctctcttggcAATTCCTTATGGAATTGTCATGCAATGTTTAGATTGACAATGGAGTTGGCAAAAGCGCAAACCGATCGAGGACCAGGCTAGGTTCAGAgtacagtgaaacagagagaacTCACATCATGACTGTCTGCTGGAATTATCTCagcctttattttattttttatttaattttttaaatgtaaaaaaaaaacattttggtttCAGTTTCATGTTAATAATACACCTGCTTTTTGGGAGAATATACACATTCCTGATGAAAAGGAATCAGTACTAAGAAACAGAGCTCTATGTACTAGTTGTTTTTAATCCTTTCAGATAGGGTCTTGTACATAGCGACTTTGAACCAAAACAACTCTCCTGAATATCAGGCCTGATGAATATGGCTATTCTTTTAATACAAAACTACACACACTTTTCCTACAGCGGCTGTCTGCAGCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1670585 lncRNA upstream 5518 50940758 ~ 50941260 (+) True G1460201
TU1670586 lncRNA upstream 13255 50931442 ~ 50933523 (+) True G1460202
TU1670587 lncRNA upstream 15450 50930038 ~ 50931328 (+) True G1460203
TU1670589 lncRNA upstream 18620 50927552 ~ 50928158 (+) True G1460205
TU1670574 lncRNA upstream 39832 50906743 ~ 50906946 (+) True G1460190
TU1670548 lncRNA downstream 135 50949727 ~ 50950543 (+) True G1460171
TU1670608 lncRNA downstream 10524 50960116 ~ 50960438 (+) True G1460215
TU1670607 lncRNA downstream 11199 50960791 ~ 50961101 (+) True G1460214
TU1670612 lncRNA downstream 22946 50972538 ~ 50972851 (+) True G1460219
TU1670622 lncRNA downstream 40315 50989907 ~ 50990506 (+) True G1460228
XM_021568732.2 mRNA upstream 49334 50894903 ~ 50897444 (+) False LOC110494047
XM_021568727.2 mRNA upstream 85680 50852607 ~ 50861098 (+) False rbbp5
XM_021568728.2 mRNA upstream 85680 50852619 ~ 50861098 (+) True rbbp5
XM_021568729.2 mRNA upstream 106374 50837015 ~ 50840404 (+) True LOC110494043
XM_036950045.1 mRNA upstream 117579 50825463 ~ 50829199 (+) True LOC110493204
XM_021568742.2 mRNA downstream 103090 51052682 ~ 51062761 (+) True apobec2a
XM_036947882.1 mRNA downstream 651841 51601433 ~ 51640269 (+) False csf1
XM_036947884.1 mRNA downstream 651852 51601444 ~ 51640269 (+) False csf1
XM_036947883.1 mRNA downstream 651872 51601464 ~ 51640269 (+) False csf1
NM_001124394.1 mRNA downstream 651938 51601530 ~ 51640412 (+) False csf1
TU1670568 other upstream 49334 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 169706 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 511072 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 763082 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 1507449 49439006 ~ 49439329 (+) True G1458807
TU1670644 other downstream 130540 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3224422 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 3306789 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 3522113 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 3522353 54471945 ~ 54473872 (+) True LOC110494110

Expression Profile