RNA id: TU1670608



Basic Information


Item Value
RNA id TU1670608
length 323
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1460215
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50960116 ~ 50960438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tggcagcatcatgttatgggtatgcttgtcatcagcaaggactacgGAGTTATTTGAGGGATATAAAGAAattgaatagagctaagcacaggcaacatcctgGAGGGAAACTtatttcagtctgctttccaacagacactggtagacaaattcatctttcagcaggacaataacctaaaacacaaggccaaatatacactggagttgcttaccaagacaacattggctcgacttgaaaatggctgtctagcaatgatcaacaaccaacttgatagaCCTTGAATAATTTTTTCAAGAATAattggcaaatattgtacaatcaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1670548 lncRNA upstream 9573 50949727 ~ 50950543 (+) True G1460171
TU1670549 lncRNA upstream 10524 50946778 ~ 50949592 (+) False G1460171
TU1670551 lncRNA upstream 10524 50946778 ~ 50949592 (+) False G1460171
TU1670585 lncRNA upstream 18856 50940758 ~ 50941260 (+) True G1460201
TU1670586 lncRNA upstream 26593 50931442 ~ 50933523 (+) True G1460202
TU1670607 lncRNA downstream 353 50960791 ~ 50961101 (+) True G1460214
TU1670612 lncRNA downstream 12100 50972538 ~ 50972851 (+) True G1460219
TU1670622 lncRNA downstream 29469 50989907 ~ 50990506 (+) True G1460228
TU1670642 lncRNA downstream 65882 51026320 ~ 51044188 (+) True G1460247
TU1670646 lncRNA downstream 119694 51080132 ~ 51137770 (+) True G1460249
XM_021568732.2 mRNA upstream 62672 50894903 ~ 50897444 (+) False LOC110494047
XM_021568727.2 mRNA upstream 99018 50852607 ~ 50861098 (+) False rbbp5
XM_021568728.2 mRNA upstream 99018 50852619 ~ 50861098 (+) True rbbp5
XM_021568729.2 mRNA upstream 119712 50837015 ~ 50840404 (+) True LOC110494043
XM_036950045.1 mRNA upstream 130917 50825463 ~ 50829199 (+) True LOC110493204
XM_021568742.2 mRNA downstream 92244 51052682 ~ 51062761 (+) True apobec2a
XM_036947882.1 mRNA downstream 640995 51601433 ~ 51640269 (+) False csf1
XM_036947884.1 mRNA downstream 641006 51601444 ~ 51640269 (+) False csf1
XM_036947883.1 mRNA downstream 641026 51601464 ~ 51640269 (+) False csf1
NM_001124394.1 mRNA downstream 641092 51601530 ~ 51640412 (+) False csf1
TU1670568 other upstream 62672 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 183044 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 524410 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 776420 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 1520787 49439006 ~ 49439329 (+) True G1458807
TU1670644 other downstream 119694 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3213576 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 3295943 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 3511267 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 3511507 54471945 ~ 54473872 (+) True LOC110494110

Expression Profile