RNA id: TU1670644



Basic Information


Item Value
RNA id TU1670644
length 10562
RNA type TUCP
GC content 0.41
exon number 2
gene id G1460249
representative False

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 51080132 ~ 51137770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTTATTTTATGTATATAgatttgtttatatatatatatatatttataataacTTTCACCTCAATTGCTTgattatcatttttttttgttctgttaaattcaaaacaacaggaCATAAAGACCAAGGCATTCCACATGATCGTATATTACAAAAGAGTAAAGAAAAATTCAGGGTGCGTGCACAtcgtgcacacacatacataatacACCAGCTTTTCTTTTAGTATAAAGAATTGAAATATGGGAAACGACTGCATCCATTGAGACATAAACAAGCACACAGACAAAAAGAAAGAggcgcgagagggagagaggaggagagcgttagaaggtccaatgcagctgtttttttttatctcaatagcAAATCATTTCAGAGTAACAGTTAAGTACCTTACGGGGATTGTTTTCAAttgaaatggtcaaaaataaagtacaaatagcttcttagcaaagagcaattttaCTAGGAATGTCTGGGAGTGGTTTGAGtgaggaggggaaaactgaaaactagctgtcatttgtctattaactcatttactggTGATATCACCAGGCAGGcctaaactccatcccaccaaaacagcctaagatttcaggtggtcttttcaacagctcttacactgaacagtcattatcatcattttcacaatttcacagtaggGGAGACGGGTAAATTGAGCCATTTTTTATATTCAGCATCACTCTGTCAAGGaaatagtattctttctaacaaagatatctacatgtatttcaggatgttgtgtatccctggaaatagtcagaattaatgtactgtaaacattacagtttttaaAACATAGTTTGTCCCCAAAAAGTGGTCTCTTAGCACATTTTTTCCAGGGTATGGGATAAGTTAAACCTCCTACAATTATCTGTACTAAATTAAATATTATCCCTACCTTTCTAAAACCATGCCTATCTTTTGTTTCCCAAATTACAACTCAACACAATCACAAATCGCATTTTTTGTATTTTAGTCATTTTGAAGCATCTTTAAACAAAGGCTTTAATACCTCAGAAAAACGTTGTGCCATTTTAAACACCGCTGTTACTTCATATCCCAGCGGTTatgcctgggaagaaaacacttcaatttgctcaacttgccattggctcaacgaTGGGCTCAACTTGCCCCAAGGCAAACACATTtggactatattagcccacacagctacaaggatgcactttcatgcttgATTTAGGACCTCATAAATGTAGCTTTTAGAGACTGATGTATAAAACATcttaaaatgatctactttggtttagatacaagcatcatgaaacctctacACAAAAGGGTTTCCAAACAGTTTTGTTCCGGGACCCCATCTTAAATATTTTAAATCAATCGCGACCCCACCATATAAAGACAATAATGTAATCAATTGACAATGTTAACTTTGTAATTGGgctatgacagtctattacaaatcagtctgaAAGTATTTTTGAAAGTATTTAATGCTGCTGGAAGTATGGGTTGAAGTGACTAAAATGCATCAGAAAGGTATTGGGAAGTTCAGATCCTCAGGCAATACTTTTGtatgatcttctgtgtagaaAATAATGTATTGTTGATgattttccttttccaacagcctgaCTTATTGCCTGGTCTTGTCCACTCTGTTCTATTGAGTCATTGTgggcattgtagagggaaacaaaATACTATTTCTAAACCGttagaaagagacacacacattagGAAGAAAACAAAAATGGCTCTGTTTTTTTACAACCACTTCCAGCGGCTACCGGAGGCTACGGACCTAATGTTTTGATTATTGTCAGAGTTTCTCTCGCGACCCCATTTTCAAAAGACTcctagtttgggaaacgctgctctGACACAATAAATTCATTTGATTTGGCTAAAATCtgttgtttttaaaaaatctaactggcttaccactttttccatatgGTTTCTACCTTCAGACTCCACGAAATTACTTTCTTAAATATTTAGTCAaattataatttatttttatgATTTCCTTAACACAATGgttgctcaacttaccccataggCTCAACTTAACCCACTCTCCCCtattatttcaacctcatagtgtggaaatatatataaaacacacgAAAATCacgtttgactgcactgggcctttaagagaAGAACTGTGAAAATAACTAAACAACAGTATTATAATTGTAGAATATTGTTGCATAGTTTGAAGCAAACATGGGTGACATTTTAGAATGATAATGAATCTTATTTACAAAAGGGGGATATGGAGAGTACAGCGAAtgtgtgttgtgtctgtatgtttgtcaggtgagacacacactgaGGAAAAGTGCTGCTCAAAAGGACCTCCAAGAACTGTTACAGACCGTTACTGTGCCCACAGAAAATGAGCTTCAATACAAACCCTCACACACATATTCGCACATTCATTATtatgcgtgcgcacacacacacacacacacacacacacacacacacacaattcaaggAACCACAGCAACGTATTTAATGAACAATTTCAGCCAATTTAATTCCTCCCTTATCTTTGATGCTGCGGTTGTTTCTCCTGCGTCAATCAAAAACAACAGGCCTGACTGTTTCAGTATCTCAGCGCTGTGGGAACATGAAGCCAAAACGCATTTCACTTTAACGCCAAACCATGCCGAGTGCCTGTCAGAATTAGTCATGATTGCATTAACGTCAGCACAGGCCAGGGTGATGAAACAACGGCTCATCCAAAGTGCGAGAGAAATTAGCAAAACACATTTCAAAAGCTGTCAGTGTTAACACAGTTCAACATAACAAAACAAGACAGCGCTCTTTGAAATGgttgtacaattatgttcacacCAAGCCAACCAATCAGCCGCCTTCTCGGACAGGTCTCCTTGGGAACAGAAATATTTTCGGTCTATGGAACTGCCTGGTTTCAACAGCATAGCTATGAAGAGAGACACCAGTTGAAAGCGGTGTTCAAGACGAGGCACAGCTGTGATGGTCACAGTAGCTGGTGATGTAAACGACACCGACTCAGAGGAAGAACAGAGGAgaagctctccttctctctctcttatgcctTACTCCTCTGGACCAGCAGCTCAACCCACAGAGTAGAAAAGAAGAGACAAGCTAGGCTGCGGTCGACACTAGCGGAATACCATTCATTTGTTACCGAGATCGAATTCTTCTCTGGTGCAAGTTGGCCACGTTTTTTTAACTAGACAAGAGACGTATGGCCTCAAACATCTCTGCTCTGCCCCATAGCCCTTGGTGactgcacgcagacacacacacacacacacacagagatctgaGCCCTGGTAATCTAAGCAAGTCTGGGCAGATGGTGCAGGACTATCAACATGGAAAGCTGGGGCCCCAAGACACAAAGAGACAAAACACACAGGTCTCACTGACAGAGCAACAGCCTTTCTAGGAAAAAACAACTAGCGAAATATCAAAAGGGAGAAAGACAAACTGTGGTGGTCGATTTGTGTACGAGCCACAAAGCATCAACTAAAAAGAAACCATAATGGATAGAACTGTTGAATAAACCAGTGAAGAATCTCAGGCATCTAGATGCTGCAGCTAGAAGAGAGGTTGACTGCTGTTTGGCACTGACAGATGAGCGCTGTCCttggatggagggagatggaatgagagaggagagttggagaGTTGAGAGGAGAGTTGAGGGAGGGCAATGAGGAAATCGATTTATGTGATAGGTGTGAAATGAGTTGATGAGCAAATGCCTACCTTGGTAGAGAGTGATTCTCCGTGGCTGTGGCTGGATGATGGAATAAACAATGAACAGCGTGGTATCATAATTACTTCTCATTTGGTGGTGAAATAGATTCAGCATGGGGGGTACTGATTTAGGAATGTTCTAAAATGCCAATAAAACCTCAAAGTAATGACTCCTCACAtggataaataaaacaaatattaacTGCAAAACTATTATTGCGTTATGCATGATAAACAGCAGTGTTGTGTGTATGGCGTTTTTGTTGGTTATCACGTCGGGCCTCTGTGGTGAGATGGGGTAAAGTAGGATGGTCGACTGCATGCCTGCTGGGAGACACATTGGGAATGAACAGACACAGGATACAGTCAAGAAGTACCTTAGCTAATAACCAAGTAGGAATCATTCAACACTAGTGATGAAGCACCCAACAGGGACTTGCTACCTACAGATAAAACCCTTCATTGAACAGATCTTTGTGCAACTGAATTTAAGTCCCGTTCACTCGCACATCCATCCATTCCATATCTTCAAAGGCAGCATCCTCTCAGTGTATGTTTCACGGGGGACAGAAACGGAGTCAAAATGTGTACGAGTTTGTACGTGCAAGTTTTGTTTTGAAAGCAAGTCAACGTTTGGGATGTCTCATTCCATACTTAACCATGCAGAACATTGAACACATATATTAAACACTACAGTCTTTTTTTTCCTCTTTTAGTACAGCGTGGTTTAAGCTACACAGAACACGAAAGTACCAATCAACCAGGTTGGACATATTGCTTTAAACCACACATTTGTTTATACATCATGCATGCCACATAGATGGTATTAtgtttatacaaaaataacaccaGTGTCTATTACTGTGCATCATATCAATGACAGAAAGTTATTTTTCGGTCTTTTCTCAATGAGATacaattgaaaatgtattaaaacacaAGAACTGGTTCGGGTAAATATCGTCCTACGTAAAATAAGGGGTTATGACTTTAAACTGTGATATTCCAGTTTTcaaaccgtttttttttttttattattatttacaacTGCGGAGAAGCTTCCCCAAAGAAATCCCCCAAATCGAAAGAAATAAAAAGCTATCTAAGAAAGAGAAGCTTTAGAGAAGCAATGCAGTCCATTACAGTTGACAGGTATTGCACAATGCCTTCGCAATTTCATTTTGTCATACATGAGTCATTATTGAGACCTGTGCAATGAGAAGGAACAGATCTTACAGATTGGTCAGACGCCACGGTGGGCTTATCCATCAGAGAAACCAAACATCGGCTTTATCAGGTCGGTCTAGCCGTTTTTTAGTTCTCCCTCCACCTCAGACATGCAGACCTGTTGGTCTGCTTCTGTTGTACAGTTGTGCCAAGgtacaaataaacaaaaacaaaaacaacaaacaaaaacattggGGTGTTTCTAGAGGATGGAGTATATGTTCACCtgtgggatggaatgggagggcAACCAGTAAGAGATCACAACAGCACAACCAAGGCCATGGCAATAGAAGAGGGACAATCTTAGTGACGCTTCAAGCTCTTTGTATTCTCTGTCCACGTTTACATGCAAAAACATGAACTATTTTGGGAAGATGGAAAACAAGGAAAACGCCTTCACCTGACAATAATCGTTTAAAACAATCTGTGCAAAAATAAAAAAGGACAAAAAAGCAACGATTGTACAAAGCAAGACTTTGGCAGAACATTCTTAAAGCTATGCTCGGTGATCCCTGACTGGTTGCCCCCTGTTCATTACCAAGAGTTATAAGTTAAGTTCAAAATCATCCTATGACAATATTTACACATACTGAATGTATAAGCGCAGTCTTCCAAATAGAGTAAGTCAGAAGAAAAGAAAGGATTCCAATTGAAAATGTGTCCCCAAAATGAGACTGTCTAATGGTCGAACGGACACCACAACGAAGGCATCTAGTTTCTGTTTATGGACAAAAACAGGaagaggaagtgatgtcactaCCAGTTTAACAGCTCTACTCTCTTCCCATAAACAGTGTTCTAAGCCATTAGAATTAAAAGGGTAATGCTGAATTTGGATGAAATTCATGCCCTCTTTGACAAGTCGACTAACGTCACTACACAGGCATCCGAGAGCACCGATCCTCTCACAAAATAAGTTAAACTCGCAGTCATATTAGTCTGAAAGAAcagaaaaaaattaacaaaatacatttatatagagattaaaaaatatatatatatacccccaATTAATTTAGCAAATCTTCAATGTTCTGTATACTACCATGTTCTATTTCACTCACTTTCATTGGACCACATTtgatttaaagggatagttcgggattttgacaatgaggccctttatttacttcaccagagtcagatgaacttgtggacaCCGTTTTTTTATGTATCTgggtgcagtttgaaggaagttgctaactagtgttagcacaaTTGCTTTAGCATTAGCCCCCCGAAACTACCTCTaatttccttcatactggacgagGATACATAAAAAACGGTGTCCACGAGTTCATCGGACTCTGGGGAAGTACTGTAgattttctatttatttatttttattttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaattacggcctaggaacagtgggttaactgcctgttcaggggcagatttgtaccttgtcagcacggggatatgaacttgcaacctttcggttactagtccaacgctctaaccactaggctaccctgccgccccagataaAAGggtctcattgccaaaatcccggaCTATCCCTTTAAGCTATTGAAAGAAATAACAGAATTTAAGATACTCTCTTTAAGACTGTATATAGTGAAAGGGAAAGGGGCGGCAAGCCTAGATTGCTGAAAGAGTATGTCCGATCACATGACCTACAGTgagtaaacaatttattttaatttagttAGCCCCAGCATCAGACGACCAAGCATGGTTTACAAATGTggcataaatatactgtatatagaacgGCAAAAACATGTTACACTGTCGATTGATCTTATTCATGGTCTGTACTGTCATCAAAACTCTTCAGcctatacatatttatatatttccaaAAAGTACTTAATATAAAAATACAGAAGAAGAATTgtaaaaaatgaacaaaaaacaTTGAGTTTCTATGAAAATCATGCAAGAAAGCTTCCCCATAATTATGTACTAAGACTCACGAAAGCAAGGGAATGAAGGAGACTAGCCGGTTGGAGTGAAGTGCAGCGGGAGCAGGCTTACTGCATCAGGCTGACTATGTTCTGTAAACATCGTAGTGGTCCATGACTTATATACTGTATCGGCAGTGACACAttattttgtctttgttttttttttgttggtcagGGGGAATAGAAAGGAAACCTCAATAACGATGGGATACAAAACAACAACGACAACCTAGAAAATATGGCTCTGAGTAAGTAGAAAAGGCGTATCACCAGAGGGTTCTATCGAAGTAAGCAACCTAGATATGAAAATAAGGTTGAAAATATGGCAGTAGTACATTACTGGTAATCGATAGCACACGTCCTGTCGAGGGCGTCACAATCTCTGTCACAGAGTTGGTGGCCGGAGGCGGAAAATGGGGTCAGCCCAAGTTAACACTCTCTCTACCATCATATACAACAATGACCAGGGGAATCATGCACCCCACACATCTTAGGGGGCACAAAGTACGTGAGGATGGCTGGGGTGGTGGTCCGGAGGGGTGGTAAGCCCCCCGACCATAAATTGgagaatttagcatttttcaaacaTCTGAAGCAGCTTTTTTTCCtgtaatctagagccataatcattatgcttaattctatgtaaaaaaatgtatatttttctgaATATTTAAGCATACCaattgagctgtctgtatccttcTGACTGGTGgttcttaaaaaaaaacaaaaaaacaaaatatacttctctgcatctctggtacaatattgaaaggaatgtgagtcttattcagtacatttagttattgcttgcttttctgaagtctaccaaccttgccagcgggcatgccagctaagaggacgacaagctagctactctaactgtattgatagcctgaaatggtttcttggtagctagttatatAAAATTGCTAAGTGcctagtagtattacagagagaaaaaaaaaggccCCCAAAAAAAGATATTTTAAACATGACAAATCTGAGGGAGCACGTGCCCCTGTGCCCCCTACGGGCATGACACCTCTGACGACAACATACACTACTGAATACAGGAGCTCTCATACACATCTCTGGTTgagtctttttttcttcttcttgttaGAGTATTCCTCTTATTGTTACACCATTATCTGTGGTTGGTTGACATGTGGGGATGTGCTGTGTCCCTATCCTAGCAGCccggaggagggagggtgggagggagcggtgcggggtgaggagggagggggagatattGGATTTATATCTGGGCCGCTCACGGTTGGCTCTCCCAGAGGCATGATGGGAGAGATCGATAGTCCCCTGTGTCACTCTGCAGCCAACACAGTGATGCTCGATAACAACATACAACACACGCACACTGGAGCTAACAGGAACAAGCCCAACGCCCCTTCGCCGACAGTGTAAAACGAGGACTAGATTTGTCTTGTTAAGGTACAGAATGTATTTGTGTGGACTTTTTCATTTTTGTGGATTTTTTTGTTGAGACAGACTAAAGCAAAAACAATTACCCATTTCTGTCCACAGGAATACGTACGTCCTAACCCCACCCCAAAATATTGTTTCACATAACCCATCTCTAAATTCCCATTCTACTCAACACAGATGAAACACGGATAATATACGTCATGCATACGAGCGATGGGGGTGAAATATCATTCACTTCACTCTGACTTTCTTAATCGTACTCCATAGAGGCAGTTTCATAAGCTGTCAACTTACTCTCAAGGGGCTGGGGAAAACCAGAACCCTGATTGGATGAGATAAGGATGAGGTCATCAGATGAGGGAGACCTCCACATCGTCTTGCCATGACCCTGCTCCACAGAGAGGGGGTGCCCTCTGGCTCTAGCCTGCTGCAAGCTTTACTTTGAAAATGTTGTTTTAAGAGAATTCACTTTTCTGTTAAAATATCATAGCATTCTTTACACTGTCCTTCAACAAAAACAGGATAAATCATAATGGAATCATGTCAAAAATGGACCCAGAAGAACCAAATTAAAGTGAGAGATGTTTAGATGATTGAACCTATATCGTTGAAACGCTGTAGTGTGTCAGAATCAATGAAGACATGGTTTCCTGCATTGAACTGAGTAACCCATTAGTACATCCTGCTTCAAAACAGATCAAATGCGTACATGCTGTACAATTAAAACACAGATTGAGAAATAGAGAAGAGAAACTTAGTAGCTGAAAGCTGTTAATCACATGGGCCATGTACATCTGATCATCCAATCAGCTTGGAGCGTTGAGCCTATAAAGCATATATACagttaactgccaaaataaaggaaacaccaaaaGTGTCTtaaatagggcgttgggccaccacgagctgccACAACAGCTTAAATGCgacttggcatagattctacaagcgtcttgaactctattggagggatgtgacagcATTCCTCCACGAGATATTCAATAATTTGGTGTTTCGTTGATGGTGGAAAATGATGTCTCAGGCGCAGCTCAAGAATCTCCCATAAGCGTTCAGTTTGGTTGAGATCGAGGGACTgagacacgtacacacactttaaaccccctatgctcctttgaggcCTCTTCTTCTAACCATCgaagccaaaataatgggcaactggatATTTGTATACATGacgggatgttaattgcttaattagcTCAGGAACCACATCTGTGTGGAAggacctgctttcaatatactttgtatccctcactTAAGTGTcttctttattttggcagttacatgtatGTACATACAATATTAATGTACACATGGGTATATTCTTAAAGTTCTGTGCCAGTTAGTGTATGCAGAGTATAAGCTAGTACAGAAGGATAAACATGTTGCGTTTCAGTTCTAGGCTACTctgaggtttaaaaaaaaaaaaaaaaaaaagaaaatgataTAAAACCCCAAAGATGGACAGAAGGACAGGCTACGGCCTTTGACGGAGCAGATTGGTGGACCCCAAATGGTCCTTCCCACCCATGAGTTAGGGGCACAATGTGATTGGATGCTCTGCATGTCACTCTTCTGCACAGACTTAAAGGGCACACGCGACACAGTCAGTGCAAGCCGATGAGAATGGCAAGGTGGGGGTGGTCAGGTGAGAGGTGGGCGTAGGGTTCAGGAAGTGGAGGGAAGAGGTGAAGAGGGGGAGGCGCTGGGACCGGGACCCCTTGCCCACTCTGGGTGCACCCTCTGTGGGATGAGTCTAAGGATCTGAGGGGCGCACCGCTGGTCCTCCtcatggtggaggagaggaactGCAGGGGGGGAGCCAGCTGGCCGACGGGTGGATGGATAGATCAGagcggaggagaagagaggaggtgaTCAGCAGGAGGTCTCGTGGCTGACGTCTGGAGCTTCTCCCCCCCCAGTCGAGGAGCTGGGGATGGGCTGGATCTCCATATCCACCTCATCGCTGCTGGACTCCTCTCTCTCAGGGATCTGCGCCTCCTCCTCAGACAGGGGGACAAACTCAGGGTGGGCCATGAAGTTATGGATGGAGTTTCTGGATTCTGGGTTCTCTAGCCCCGGGTAAAGGGAGCTACGGA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1670642 lncRNA upstream 35944 51026320 ~ 51044188 (+) True G1460247
TU1670622 lncRNA upstream 89626 50989907 ~ 50990506 (+) True G1460228
TU1670612 lncRNA upstream 107281 50972538 ~ 50972851 (+) True G1460219
TU1670607 lncRNA upstream 119031 50960791 ~ 50961101 (+) True G1460214
TU1670608 lncRNA upstream 119694 50960116 ~ 50960438 (+) True G1460215
TU1670732 lncRNA downstream 122573 51213462 ~ 51215222 (+) False G1460330
TU1670734 lncRNA downstream 122573 51213462 ~ 51215222 (+) False G1460330
TU1670735 lncRNA downstream 122573 51213462 ~ 51214669 (+) False G1460330
TU1670738 lncRNA downstream 122573 51213462 ~ 51214669 (+) False G1460330
TU1670739 lncRNA downstream 122573 51213462 ~ 51214669 (+) False G1460330
XM_021568742.2 mRNA upstream 17371 51052682 ~ 51062761 (+) True apobec2a
XM_021568732.2 mRNA upstream 182688 50894903 ~ 50897444 (+) False LOC110494047
XM_021568727.2 mRNA upstream 219034 50852607 ~ 50861098 (+) False rbbp5
XM_021568728.2 mRNA upstream 219034 50852619 ~ 50861098 (+) True rbbp5
XM_021568729.2 mRNA upstream 239728 50837015 ~ 50840404 (+) True LOC110494043
XM_036947882.1 mRNA downstream 510544 51601433 ~ 51640269 (+) False csf1
XM_036947884.1 mRNA downstream 510555 51601444 ~ 51640269 (+) False csf1
XM_036947883.1 mRNA downstream 510575 51601464 ~ 51640269 (+) False csf1
NM_001124394.1 mRNA downstream 510641 51601530 ~ 51640412 (+) False csf1
XM_036950089.1 mRNA downstream 876150 51967039 ~ 52121978 (+) False LOC110494059
TU1670568 other upstream 182688 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 303060 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 644426 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 896436 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 1640803 49439006 ~ 49439329 (+) True G1458807
TU1674769 other downstream 3083125 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 3165492 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 3380816 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 3381056 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 4905759 55996648 ~ 55998174 (+) False G1466124

Expression Profile


TU1670644 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
End of interactive chart.

TU1670644 Expression in each Bioproject

Bar chart with 15 bars.
TU1670644 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.