RNA id: TU1670826


Basic Information

Item Value
RNA id TU1670826
length 337
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1460414
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 51311418 ~ 51311754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatctacactgagtgtaccaaacattaggaacaccttaatattgagttgcaccccccctttGCCGTCAAGCCAGTGTGCTTGGCATCTAATACcttaccccattcaaaggcacttcaatattttgtcttgcccattcaccctctgaatggtacacatacacaatccatgtctcaattgtctcatgtCTTAAAAATCCTGATTTAACCTTCTTTAATCtgtcttcatctacactgattgaagtggatttaacaggtgacatcaataaggaatcatagctttaaCCTGTATTCACCTTTCCAGTGTGTCATACATCCAAATTATACAACAGATGGACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1670825 lncRNA upstream 243 51310954 ~ 51311175 (+) True G1460413
TU1670734 lncRNA upstream 96196 51213462 ~ 51215222 (+) False G1460330
TU1670833 lncRNA downstream 11446 51323200 ~ 51323428 (+) True G1460421
TU1670841 lncRNA downstream 20974 51332728 ~ 51332948 (+) True G1460429
TU1670855 lncRNA downstream 39267 51351021 ~ 51351304 (+) True G1460443
TU1670857 lncRNA downstream 42226 51353980 ~ 51354247 (+) True G1460445
TU1670859 lncRNA downstream 45910 51357664 ~ 51357881 (+) True G1460447
XM_021568742.2 mRNA upstream 248657 51052682 ~ 51062761 (+) True apobec2a
XM_021568732.2 mRNA upstream 413974 50894903 ~ 50897444 (+) False LOC110494047
XM_021568727.2 mRNA upstream 450320 50852607 ~ 50861098 (+) False rbbp5
XM_021568728.2 mRNA upstream 450320 50852619 ~ 50861098 (+) True rbbp5
XM_021568729.2 mRNA upstream 471014 50837015 ~ 50840404 (+) True LOC110494043
XM_036947882.1 mRNA downstream 289679 51601433 ~ 51640269 (+) False csf1
XM_036947884.1 mRNA downstream 289690 51601444 ~ 51640269 (+) False csf1
XM_036947883.1 mRNA downstream 289710 51601464 ~ 51640269 (+) False csf1
NM_001124394.1 mRNA downstream 289776 51601530 ~ 51640412 (+) False csf1
XM_036950089.1 mRNA downstream 655285 51967039 ~ 52121978 (+) False LOC110494059
TU1670644 other upstream 220529 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 413974 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 534346 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 875712 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 1127722 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 2862260 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 2944627 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 3159951 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 3160191 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 4684894 55996648 ~ 55998174 (+) False G1466124

Expression Profile