RNA id: TU1670833


Basic Information

Item Value
RNA id TU1670833
length 229
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1460421
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 51323200 ~ 51323428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcctgtggatttctgaacataacacgccaaacaaacagaggtattttggatataaaaatcatctttatggaacaaaaggaacatttattgtgtaactgggagtctcatgagtgacaacatccgaagatcatcaaaggtaaactattaatttgattgcttttctgattttcgtgaccaagctacttgatgctaagtgtacataatgttttgtcgagcgatcgataaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1670826 lncRNA upstream 11446 51311418 ~ 51311754 (+) True G1460414
TU1670825 lncRNA upstream 12025 51310954 ~ 51311175 (+) True G1460413
TU1670742 lncRNA upstream 107978 51213462 ~ 51215222 (+) True G1460330
TU1670735 lncRNA upstream 108531 51213462 ~ 51214669 (+) False G1460330
TU1670841 lncRNA downstream 9300 51332728 ~ 51332948 (+) True G1460429
TU1670855 lncRNA downstream 27593 51351021 ~ 51351304 (+) True G1460443
TU1670857 lncRNA downstream 30552 51353980 ~ 51354247 (+) True G1460445
TU1670859 lncRNA downstream 34236 51357664 ~ 51357881 (+) True G1460447
TU1670861 lncRNA downstream 36673 51360101 ~ 51360321 (+) True G1460449
XM_021568742.2 mRNA upstream 260439 51052682 ~ 51062761 (+) True apobec2a
XM_021568732.2 mRNA upstream 425756 50894903 ~ 50897444 (+) False LOC110494047
XM_021568727.2 mRNA upstream 462102 50852607 ~ 50861098 (+) False rbbp5
XM_021568728.2 mRNA upstream 462102 50852619 ~ 50861098 (+) True rbbp5
XM_021568729.2 mRNA upstream 482796 50837015 ~ 50840404 (+) True LOC110494043
XM_036947882.1 mRNA downstream 278005 51601433 ~ 51640269 (+) False csf1
XM_036947884.1 mRNA downstream 278016 51601444 ~ 51640269 (+) False csf1
XM_036947883.1 mRNA downstream 278036 51601464 ~ 51640269 (+) False csf1
NM_001124394.1 mRNA downstream 278102 51601530 ~ 51640412 (+) False csf1
XM_036950089.1 mRNA downstream 643611 51967039 ~ 52121978 (+) False LOC110494059
TU1670644 other upstream 232311 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 425756 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 546128 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 887494 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 1139504 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 2850586 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 2932953 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 3148277 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 3148517 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 4673220 55996648 ~ 55998174 (+) False G1466124

Expression Profile