RNA id: TU1670859


Basic Information

Item Value
RNA id TU1670859
length 218
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1460447
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 51357664 ~ 51357881 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataccacccaatgTGGCGTTGATTCGTGCAAAGTTGatggcaaatgccatatggcaattgccagttgtaacacttcaaaaatccaacagtgcgctccaccggggtttttcatattggaaatgcaacccattaaaaaagtgctttctggaccgtttttcgaaattctttcgattttttttgtcaattacacatgtgtaagaactgtatgaatatacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1670857 lncRNA upstream 3417 51353980 ~ 51354247 (+) True G1460445
TU1670855 lncRNA upstream 6360 51351021 ~ 51351304 (+) True G1460443
TU1670841 lncRNA upstream 24716 51332728 ~ 51332948 (+) True G1460429
TU1670833 lncRNA upstream 34236 51323200 ~ 51323428 (+) True G1460421
TU1670826 lncRNA upstream 45910 51311418 ~ 51311754 (+) True G1460414
TU1670861 lncRNA downstream 2220 51360101 ~ 51360321 (+) True G1460449
TU1670867 lncRNA downstream 16626 51374507 ~ 51374748 (+) True G1460455
TU1670882 lncRNA downstream 30502 51388383 ~ 51388599 (+) True G1460468
TU1670883 lncRNA downstream 30944 51388825 ~ 51389091 (+) True G1460469
TU1671223 lncRNA downstream 65274 51423155 ~ 51530654 (+) True G1460787
XM_021568742.2 mRNA upstream 294903 51052682 ~ 51062761 (+) True apobec2a
XM_021568732.2 mRNA upstream 460220 50894903 ~ 50897444 (+) False LOC110494047
XM_021568727.2 mRNA upstream 496566 50852607 ~ 50861098 (+) False rbbp5
XM_021568728.2 mRNA upstream 496566 50852619 ~ 50861098 (+) True rbbp5
XM_021568729.2 mRNA upstream 517260 50837015 ~ 50840404 (+) True LOC110494043
XM_036947882.1 mRNA downstream 243552 51601433 ~ 51640269 (+) False csf1
XM_036947884.1 mRNA downstream 243563 51601444 ~ 51640269 (+) False csf1
XM_036947883.1 mRNA downstream 243583 51601464 ~ 51640269 (+) False csf1
NM_001124394.1 mRNA downstream 243649 51601530 ~ 51640412 (+) False csf1
XM_036950089.1 mRNA downstream 609158 51967039 ~ 52121978 (+) False LOC110494059
TU1670644 other upstream 266775 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 460220 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 580592 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 921958 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 1173968 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 2816133 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 2898500 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 3113824 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 3114064 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 4638767 55996648 ~ 55998174 (+) False G1466124

Expression Profile