RNA id: TU1670883


Basic Information

Item Value
RNA id TU1670883
length 267
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1460469
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 51388825 ~ 51389091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttctgtcatcatgaagtgctttgagagactagtgaaggatcatatcacctccaccttacaggccatcctagacccacttcagtttgcataccaccctaacaggtccacagacgatgcaatcgccatcatactgccctatcccatctggaaaagaggaatacctatgtaagaatactgttcattgactacagctcagcattcaacaccatagtaccctccaagctcatcatcaagctggcgccctgtgcaattgggtcctggacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1670882 lncRNA upstream 226 51388383 ~ 51388599 (+) True G1460468
TU1670867 lncRNA upstream 14077 51374507 ~ 51374748 (+) True G1460455
TU1670861 lncRNA upstream 28504 51360101 ~ 51360321 (+) True G1460449
TU1670859 lncRNA upstream 30944 51357664 ~ 51357881 (+) True G1460447
TU1670857 lncRNA upstream 34578 51353980 ~ 51354247 (+) True G1460445
TU1671223 lncRNA downstream 34064 51423155 ~ 51530654 (+) True G1460787
TU1671237 lncRNA downstream 48299 51437390 ~ 51438210 (+) True G1460798
TU1671424 lncRNA downstream 179125 51568216 ~ 51568432 (+) True G1460981
TU1671440 lncRNA downstream 186679 51575770 ~ 51576052 (+) True G1460997
TU1671446 lncRNA downstream 245251 51634342 ~ 51637694 (+) True csf1
XM_021568742.2 mRNA upstream 326064 51052682 ~ 51062761 (+) True apobec2a
XM_021568732.2 mRNA upstream 491381 50894903 ~ 50897444 (+) False LOC110494047
XM_021568727.2 mRNA upstream 527727 50852607 ~ 50861098 (+) False rbbp5
XM_021568728.2 mRNA upstream 527727 50852619 ~ 50861098 (+) True rbbp5
XM_021568729.2 mRNA upstream 548421 50837015 ~ 50840404 (+) True LOC110494043
XM_036947882.1 mRNA downstream 212342 51601433 ~ 51640269 (+) False csf1
XM_036947884.1 mRNA downstream 212353 51601444 ~ 51640269 (+) False csf1
XM_036947883.1 mRNA downstream 212373 51601464 ~ 51640269 (+) False csf1
NM_001124394.1 mRNA downstream 212439 51601530 ~ 51640412 (+) False csf1
XM_036950089.1 mRNA downstream 577948 51967039 ~ 52121978 (+) False LOC110494059
TU1670644 other upstream 297936 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 491381 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 611753 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 953119 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 1205129 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 2784923 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 2867290 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 3082614 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 3082854 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 4607557 55996648 ~ 55998174 (+) False G1466124

Expression Profile